View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_3 (Length: 667)
Name: NF19972_high_3
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 89 - 595
Target Start/End: Complemental strand, 2183023 - 2182517
Alignment:
| Q |
89 |
tgatttctcccaattcttctacacagtcaaatgcaatggattgagcattaatattgcaggaataaatcatgatatcttttaacagtttgaaccggaaagt |
188 |
Q |
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| T |
2183023 |
tgatttctcctaattcttttagacagtcaaatgcaatggattgaacatttatattgcaggaataaatcatgaaatctgttaacagcttgaacctaaaagt |
2182924 |
T |
|
| Q |
189 |
tgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaacaaaac |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||| | |
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| T |
2182923 |
tgacacttacttcggttggagtcattgttccgggaatgtataaaatgtcaccaccttgaacataattcaaaatatcctgataaagaagtt-aaacaaagc |
2182825 |
T |
|
| Q |
289 |
tgcatattggtaagacatcctagtatggcctcaaatacggaaatatgagattcaacaatg-caaaagccaattctaacaacaataattattataaagtaa |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| ||||| || ||| ||||||||||||| |||||||||||| |
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| T |
2182824 |
tgcatattggtaagacatcctagtatggcctcaaatactgaaatttgacagtcaataatctcaaaatcccattttaacaacaataataattataaagtaa |
2182725 |
T |
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| Q |
388 |
atgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagctccggcgttaattgcagtttttgcatcctcaatcctgagaacagttc |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2182724 |
atgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagccccggctttaattgcagtttttgcatcctcaatcctgagaacagttc |
2182625 |
T |
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| Q |
488 |
caacctaagggcagatatctgctgagttcagacaatcgttgaaaagaaatgtaaatcttctgtaatgtaaatgatagatatttgatcatctatatgttac |
587 |
Q |
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| T |
2182624 |
caacctaagggcagatatctgttgagttcagacaatcgttgaaaagaaatgtaaatcttctataatgtaaatgatagatatttgatcatctatatgttac |
2182525 |
T |
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| Q |
588 |
gaagacaa |
595 |
Q |
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|||||||| |
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| T |
2182524 |
gaagacaa |
2182517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 3574441 - 3574329
Alignment:
| Q |
184 |
aaagttgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaac |
283 |
Q |
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|||||||| |||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||| |
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| T |
3574441 |
aaagttgaaactttcttcagttggagtcattgtccgggggatatataaaatttcaccaccttgaacatagtccaaaatatattgat-aacaagttaaaac |
3574343 |
T |
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| Q |
284 |
aaaactgcatattg |
297 |
Q |
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|| ||||||||||| |
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| T |
3574342 |
aagactgcatattg |
3574329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 3574197 - 3574140
Alignment:
| Q |
383 |
agtaaatgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagc |
440 |
Q |
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||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
3574197 |
agtaaatgtaaataaaaattcaaacctcaacaattgcaggactcattagaaatttagc |
3574140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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