View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_4 (Length: 642)
Name: NF19972_high_4
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 5837204 - 5837584
Alignment:
| Q |
15 |
aatatcgaaggcatcaggccatgacaaacatggagaacacgcataaataatatagcaattaggctttatggctgtgaagtccagatacactgaatatgaa |
114 |
Q |
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| T |
5837204 |
aatatcgaaggcatcaggccatgacaaacatggagaacacacataaataatatagcaattaggctttatggctgtgaagtccagatacattaaatatgaa |
5837303 |
T |
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| Q |
115 |
gttgtatccgtatcggataccgatactttttccatattcacagttactcgtcaatacctatctacaaagtactcgaatcaatttatagtttaaaaaatta |
214 |
Q |
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| T |
5837304 |
gttgtatccgtatcggataccgatactttttccatattcacagttactcgtcaatacctatccacaaagtactcgaatcaatttatagtttaaaaaatta |
5837403 |
T |
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| Q |
215 |
tttatctatacttgtgggctaccttaaaaatacataaggatacttttcagatacgtatcctaaaaaatattaagtttaaagatgaagcaatttagattga |
314 |
Q |
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| T |
5837404 |
tttatctatacttgtggaataccctaaaaatacataaggatacatttcagatacgtatcctaaaaaatattaagtttaaagatgaagcaatttagattga |
5837503 |
T |
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| Q |
315 |
tgcaccattactaagatggaatctgcagcacttattgaatctacaactgtaatcttatgttttcagcattgtacttatctt |
395 |
Q |
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| T |
5837504 |
tgcaccattaataagatggaatctgcagcacttattgaatctacatctgtaatcttatgttttcagcattgtacttatctt |
5837584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 400 - 622
Target Start/End: Original strand, 5837614 - 5837849
Alignment:
| Q |
400 |
tttcatgtctgtttgtaattttgttagaagctcac-cataagctaaacaattttcatgaggaattgaaatgatttcttaagtattttcttggttctatgt |
498 |
Q |
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| T |
5837614 |
tttcatgtctgtttgtaattttgtttgaagctcactcataagctaaacaattttcatgaggaattgaaatgatttcttaagtattttcttggttctatgt |
5837713 |
T |
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| Q |
499 |
tgtggtttgtgagaactaattttaaatcaaattatttttactattaac-------------ttgatcacctacattattttgcaaacttgcttgatattg |
585 |
Q |
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| T |
5837714 |
tgtgctttgtgagaactaattttaaatcaaatta-ttttactattaacttgagcctgtagtttgatcacctacattattttgcaaacttgcttgatattg |
5837812 |
T |
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| Q |
586 |
gaagagttattaactggacctacttgatttttactag |
622 |
Q |
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| T |
5837813 |
gaagagttattaactggacctacttgatttttactag |
5837849 |
T |
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