View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_high_5 (Length: 616)
Name: NF19972_high_5
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 435 - 601
Target Start/End: Original strand, 2024878 - 2025043
Alignment:
| Q |
435 |
tatagatagcaaggattagatataatgtgtttcagcttgtatgcttggcccaatgatttcctgccaaataatatagaagctttactatgagaatattcaa |
534 |
Q |
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| T |
2024878 |
tatagatagaaaggattagttatgatgtatttcagcttgtatgcattgcc-aatgatttcctgccaagtaatatagaagctttactataagagtattcaa |
2024976 |
T |
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| Q |
535 |
gcaatccatttagagaaacgtgttcatgtagaatgcaatgatgataatcatgaagaaatgcacatac |
601 |
Q |
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| T |
2024977 |
gccttccatttagagaaacgtgttcatgtagaatgcaatgatgataatcatgaagaaatgcacatac |
2025043 |
T |
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Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 435 - 601
Target Start/End: Complemental strand, 10957430 - 10957279
Alignment:
| Q |
435 |
tatagatagcaaggattagatataatgtgtttcagcttgtatgcttggcccaatgatttcctgccaaataatatagaagctttactatgagaat-attca |
533 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| |||| | ||||| |||||||||| ||||||||||||||| ||| |
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| T |
10957430 |
tataaatagcaaggattagctataatgtgtttcagcttgtatgctt---------attttcagccaactaatatagaatctttactatgagaatgatt-- |
10957342 |
T |
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| Q |
534 |
agcaatccatttagagaaacgtgttcatgtagaatgcaatgatgataatcatgaagaaatgcacatac |
601 |
Q |
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| T |
10957341 |
-----tccatttagagaaacgtgttcatgtagtatgcaatgatgataatcatgaagaaatgcacatac |
10957279 |
T |
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