View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19972_high_6 (Length: 462)

Name: NF19972_high_6
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19972_high_6
NF19972_high_6
[»] chr2 (1 HSPs)
chr2 (248-436)||(18678931-18679134)
[»] chr7 (2 HSPs)
chr7 (19-76)||(2639981-2640038)
chr7 (247-306)||(18508541-18508600)
[»] chr8 (2 HSPs)
chr8 (313-436)||(30808009-30808145)
chr8 (104-186)||(28734827-28734909)
[»] chr6 (2 HSPs)
chr6 (374-436)||(8543712-8543775)
chr6 (102-177)||(8543809-8543884)
[»] chr4 (2 HSPs)
chr4 (374-436)||(40197475-40197536)
chr4 (96-177)||(37665004-37665085)
[»] chr5 (2 HSPs)
chr5 (254-337)||(33704514-33704597)
chr5 (260-337)||(33716852-33716928)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 248 - 436
Target Start/End: Complemental strand, 18679134 - 18678931
Alignment:
Q  248 tttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatatggtagttagt 347  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||    
T  18679134 tttgtttacttgagggacaagttaggtcacataagcttgtatgattatggattaaagagggtgtattaaaatattaatccataatcatatggtagttagt 18679035  T
Q  348 tacataatcg-ttttcggactttggtg--------------aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaa 432  Q
    ||||||| || |||||||||||||  |              ||||| |||||||||||||||||||| | |||||||| || |||||||||| |||||||    
T  18679034 tacataaccgtttttcggactttgaggagttagttactaataacttacatcacaaatcaagtgtatacagctagttgtgatactctttttcatcaatcaa 18678935  T
Q  433 tgaa 436  Q
    ||||    
T  18678934 tgaa 18678931  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 2639981 - 2640038
Alignment:
Q  19 gtatgtatgtgttaaacctgagtgacactgatatcacaatgatatgcttgtatgttga 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2639981 gtatgtatgtgttaaacctgagggacactgatatcacaatgatatgcttgtatgttga 2640038  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 18508541 - 18508600
Alignment:
Q  247 atttgtttacttgagggacaagttatgcctcataagcttgtatgattatggattaaaggg 306  Q
    ||||||||||||||||||||| ||| | |||||||||||||| |||||| ||||||||||    
T  18508541 atttgtttacttgagggacaaattaggtctcataagcttgtaggattatagattaaaggg 18508600  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 436
Target Start/End: Complemental strand, 30808145 - 30808009
Alignment:
Q  313 ttagaatattaatccataatcatatggtagttagttacataatcgttttcggactttggtga-------------acttgcatcacaaatcaagtgtata 399  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||  |||||||| |||             |||||||| |||| |||||||||||    
T  30808145 ttagaatattaatccataatcatagggtagttagttacataaccatttctggactttgctgagtagttactgataacttgcataacaagtcaagtgtata 30808046  T
Q  400 taactagttgtaatgctctttttcaacaatcaatgaa 436  Q
    |||||| ||| |||||||||||||| |||||||||||    
T  30808045 taactaattgcaatgctctttttcatcaatcaatgaa 30808009  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 28734909 - 28734827
Alignment:
Q  104 attgcacatggtagaagaaatcatataaagactagattcaacttcatcagagagaaagtggtgaaaggcatgctcaaagtcat 186  Q
    ||||||||||| ||||| || ||||||  | |||||||  |||||||||||||| ||||| ||||||| ||||| ||| ||||    
T  28734909 attgcacatggaagaagcaagcatatatggcctagatttcacttcatcagagagcaagtgatgaaaggaatgctgaaaatcat 28734827  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 374 - 436
Target Start/End: Complemental strand, 8543775 - 8543712
Alignment:
Q  374 aacttgcatcacaaatcaagtgtatataactagttgtaatgc-tctttttcaacaatcaatgaa 436  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  8543775 aacttgcatcacaagtcaagtgtatataactagttgtaatgcttttttttcatcaatcaatgaa 8543712  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 8543809 - 8543884
Alignment:
Q  102 ctattgcacatggtagaagaaatcatataaagactagattcaacttcatcagagagaaagtggtgaaaggcatgct 177  Q
    ||||| ||||||||||||| || |||| | ||||||||||  ||||||| |||||  ||||| |||||||||||||    
T  8543809 ctattccacatggtagaagcaagcataaagagactagatttcacttcattagagaccaagtgatgaaaggcatgct 8543884  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 436
Target Start/End: Complemental strand, 40197536 - 40197475
Alignment:
Q  374 aacttgcatcacaaatcaagtgtatataactagttgtaatgctctttttcaacaatcaatgaa 436  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||    
T  40197536 aacttgcatcacaagtcaagtgtatataactagttgtaatgct-tctttcatcaatcaatgaa 40197475  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 37665004 - 37665085
Alignment:
Q  96 aaaatcctattgcacatggtagaagaaatcatataaagactagattcaacttcatcagagagaaagtggtgaaaggcatgct 177  Q
    |||||||||||||||||  |||||| || |||||| |||| || ||| |||||||||||||||||||| | ||||| |||||    
T  37665004 aaaatcctattgcacattatagaagcaaacatatagagacaaggttccacttcatcagagagaaagtgatcaaaggaatgct 37665085  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 33704597 - 33704514
Alignment:
Q  254 tacttgagggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat 337  Q
    ||||| |||||||||||| | |||||||||||||| |||||||||||||||||  | ||||| |  | ||||||||||||||||    
T  33704597 tacttaagggacaagttaggtctcataagcttgtaagattatggattaaaggggttgtattaaatgactaatccataatcatat 33704514  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 33716928 - 33716852
Alignment:
Q  260 agggacaagttatgcctcataagcttgtatgattatggattaaagggtgtttattagaatattaatccataatcatat 337  Q
    |||||||||||| | |||||||||||||| |||| ||||||||||||  | ||||| |  | ||||||||||||||||    
T  33716928 agggacaagtta-gtctcataagcttgtaagattgtggattaaaggggttgtattaaatgactaatccataatcatat 33716852  T

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