View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19972_low_10 (Length: 322)
Name: NF19972_low_10
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 29062906 - 29062619
Alignment:
| Q |
19 |
agaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29062906 |
agaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaaccaaagtgacttgtttagtggccatttcaattttcatttgtgatga |
29062807 |
T |
|
| Q |
119 |
tggtttttctctatttgtgtttgttggacttagaaatgtggagatgcctattggaaattgagcttcctcaaggaaagagagaagagaagggaattatttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29062806 |
tggtttttctctatttgtgtttgttggacttagaaatgtggagatgcctattggaaattgagcttcctcaaggaaagagagaagagaagggaattatttg |
29062707 |
T |
|
| Q |
219 |
aattgaatgatggatgtttgccaaacattgtatttatagagtttgagtaaataattattttactcattgaatatgggaaacaatatcc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29062706 |
aattgaatgatggatgtttgccaaacattgtatttatagagcttgagtaaataattattttactctttgaatatgggaaacaatatcc |
29062619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University