View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_low_23 (Length: 222)
Name: NF19972_low_23
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 52252032 - 52251839
Alignment:
| Q |
11 |
agattattctcattttttccctgaattggaacagccaaatgtaaacacaaagaaaagaaatcaccccgaagattcatcacaatcacaatcagagttacat |
110 |
Q |
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| T |
52252032 |
agattattcccattttttccctgaattggaacagccaaatgtaaacacaaagaaaagaaatcaccccgaagattcatcacaatcacaatcggagttacat |
52251933 |
T |
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| Q |
111 |
tatcaatggattgatgtgaaaaacaccaacaacaacttcaatgatactaattctttaaacaacttccttactactctcattcaaatggatacac |
204 |
Q |
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| T |
52251932 |
tatcaatggattgatgtgaaaaacaccaacaacaacttcaatgatactaattctttaaacaacttccttactactctcattcaaatggatacac |
52251839 |
T |
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