View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_low_24 (Length: 207)
Name: NF19972_low_24
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 2481464 - 2481598
Alignment:
| Q |
50 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
149 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2481464 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
2481563 |
T |
|
| Q |
150 |
nnnnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
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||||||||| ||| |||||||||||||| |
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| T |
2481564 |
aaaaaaggtagattcgtaaaaaagaatggggttat |
2481598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 12632653 - 12632519
Alignment:
| Q |
50 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
149 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12632653 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
12632554 |
T |
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| Q |
150 |
nnnnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
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||||||||| ||| |||||||||||||| |
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| T |
12632553 |
aaaaaaggtagattcgtaaaaaagaatggggttat |
12632519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 27108360 - 27108226
Alignment:
| Q |
50 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
149 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27108360 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
27108261 |
T |
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| Q |
150 |
nnnnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
| |
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||||||||| ||| |||||||||||||| |
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| T |
27108260 |
aaaaaaggtagattcgtaaaaaagaatggggttat |
27108226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 44680973 - 44680839
Alignment:
| Q |
50 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680973 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
44680874 |
T |
|
| Q |
150 |
nnnnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
| |
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||||||||| ||| |||||||||||||| |
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|
| T |
44680873 |
aaaaaaggtagattcgtaaaaaagaatggggttat |
44680839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 23272215 - 23272081
Alignment:
| Q |
50 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
149 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23272215 |
tgagacaaattgtgttccatttgtttgtcaaatttttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaatt |
23272116 |
T |
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| Q |
150 |
nnnnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
| |
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||||||||| ||| |||||||||||||| |
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| T |
23272115 |
aaaaaaggtagattcgtaaaaaagaatggggttat |
23272081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 4709145 - 4709013
Alignment:
| Q |
52 |
agacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatnnn |
151 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| || ||||| |
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| T |
4709145 |
agacaaattttgtttcctttgttggtcaaatttttcttagtgaagaagaaggatatgtcttttataagagatatgcttatcagcaagaattgtcaataaa |
4709046 |
T |
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| Q |
152 |
nnnnggtagattcacaaacaagaatggggttat |
184 |
Q |
| |
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||||||||| ||| |||||||||||||| |
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| T |
4709045 |
aaaaggtagattcgtaaaaaagaatggggttat |
4709013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 4708773 - 4708873
Alignment:
| Q |
47 |
taatgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctca |
146 |
Q |
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|||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
4708773 |
taatgagacaaattatgttctctttgttggtcgaattttttttagtgaaaaagaagcatgtct-ttttataagagatatgcttatcaacaagggttctca |
4708871 |
T |
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| Q |
147 |
at |
148 |
Q |
| |
|
|| |
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|
| T |
4708872 |
at |
4708873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 39789412 - 39789350
Alignment:
| Q |
85 |
ttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaa |
147 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||| |
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| T |
39789412 |
ttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttctcaa |
39789350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 13510120 - 13510187
Alignment:
| Q |
62 |
tgttccctttgttggtcaaat--ttttcttagtgaagaagaagcatttgtcttttataagagatatgc |
127 |
Q |
| |
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|||||| |||||||||||||| ||||||||| | |||||| |||||||||| |||||||||||||| |
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| T |
13510120 |
tgttccttttgttggtcaaatatttttcttagcaaggaagaaacatttgtcttctataagagatatgc |
13510187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 18616254 - 18616199
Alignment:
| Q |
51 |
gagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatt |
106 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||| |||||||||| |
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|
| T |
18616254 |
gagacaaattgtgttttttttgctggtcaaatttttcttaatgaaaaagaagcatt |
18616199 |
T |
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