View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_low_8 (Length: 386)
Name: NF19972_low_8
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_low_8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 6554827 - 6555212
Alignment:
| Q |
1 |
cctgtgatgcaattcttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554827 |
cctgtgatgcaattcttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaag |
6554926 |
T |
|
| Q |
101 |
cagccctcgttgctcacttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554927 |
cagccctcgttgctcacttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatca |
6555026 |
T |
|
| Q |
201 |
ggtataaattttctttaacatctatttatcggttacgctgcaggcattctttattaggtttttatatttagtcaatctcatccttacaaaaccggtacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
6555027 |
ggtataaattttctttaacatctatttatcggttacgctgcaggcattctttattaggtttttatatttagtcaaactcatccttacaaaaccagtacta |
6555126 |
T |
|
| Q |
301 |
atactggtgatcatgtacaaaatcgatacttatcttatctcttaagattagtttcctccatattacttagttactaacatgatttt |
386 |
Q |
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| T |
6555127 |
atactggtgatcaagtacaaaatcgatacttatcttatctcttaagattagtttcctccatattacttagttactaacatgatttt |
6555212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 49057713 - 49057442
Alignment:
| Q |
16 |
ttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgttgctc |
115 |
Q |
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||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||| |||| || ||| || |
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| T |
49057713 |
ttgcaggcgttcaatgggaaaaaatgggagaaattcaacagtgagaaagtggcgtcacttgcatatgctcgcatacaagggaaaacagctcttgttaatc |
49057614 |
T |
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| Q |
116 |
acttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtataaattttctt |
215 |
Q |
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| |||||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
49057613 |
atttccagcattcaagcttgatgaatgtggataagcactgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtagaaatttcctt |
49057514 |
T |
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| Q |
216 |
taacatctatttatcggttacgctgcaggcattctttattaggtttttatatttagtcaatctcatccttac |
287 |
Q |
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| T |
49057513 |
taacatctatttatcagttacgatgcatgtattgtttattaagtttttatattgattcaaactcatccttac |
49057442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 49057388 - 49057339
Alignment:
| Q |
244 |
gcattctttattaggtttttatatttagtcaatctcatccttacaaaacc |
293 |
Q |
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| T |
49057388 |
gcattctttattaggtttttatgttgagtctaactcatccttacaaaacc |
49057339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 40158187 - 40158054
Alignment:
| Q |
16 |
ttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgttgctc |
115 |
Q |
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||||||| |||| | || |||||||||||||| || || ||||| ||||| |||||||| |||||||| || || ||||||| ||| | || ||| ||| |
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| T |
40158187 |
ttgcaggctttccatggtaagaaatgggagaagtttaacagtgaaaaagtagcatcacttgcatatgcccgaattcaaggaagagcttctcttgtttctc |
40158088 |
T |
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| Q |
116 |
acttccagaattcaagcttaatgaatgaggataa |
149 |
Q |
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| T |
40158087 |
atttccagaattcaagcctgatgaatgaagataa |
40158054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 32820491 - 32820451
Alignment:
| Q |
252 |
tattaggtttttatatttagtcaatctcatccttacaaaac |
292 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||| |
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| T |
32820491 |
tattaggtttttatattaagtctaactcatccttacaaaac |
32820451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 45037983 - 45037810
Alignment:
| Q |
31 |
gggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgttgctcacttccagaattcaa |
130 |
Q |
| |
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||||| ||||||||||| || || ||||| || || ||| ||| |||||||| || || ||||||||| | || || ||||||| ||||||||||||| |
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| T |
45037983 |
gggaaaaaatgggagaagtttaacagtgaaaaggtagcagtacttgcatatgcccgaattcaaggaaaatctgctcttattgctcatttccagaattcaa |
45037884 |
T |
|
| Q |
131 |
gcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggta |
204 |
Q |
| |
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|| | |||||||| ||||| || ||| | ||||| || || | || |||||||||||||| ||||||| |||| |
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| T |
45037883 |
gcctgatgaatgaagataaacgttgccgccctattctattccatacagatggtccaaatgccggtgatccggta |
45037810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 28496488 - 28496532
Alignment:
| Q |
251 |
ttattaggtttttatatttagtcaatctcatccttacaaaaccgg |
295 |
Q |
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|||||||||||||||||| || | | ||||||||||||||||||| |
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| T |
28496488 |
ttattaggtttttatattgagcctaactcatccttacaaaaccgg |
28496532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 32973195 - 32973155
Alignment:
| Q |
252 |
tattaggtttttatatttagtcaatctcatccttacaaaac |
292 |
Q |
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|||||||||||||||||| ||| | |||||||||||||||| |
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| T |
32973195 |
tattaggtttttatatttggtctaactcatccttacaaaac |
32973155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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