View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19972_low_9 (Length: 376)
Name: NF19972_low_9
Description: NF19972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19972_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 24882857 - 24883197
Alignment:
| Q |
14 |
tagcaaaggtctaaagctagggatctattctgatgcagggtatcacatgttaaactaaaactttgatttttaatatttgtgattgatcaacaattttcac |
113 |
Q |
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| T |
24882857 |
tagcaaaggtctaaagctagggatctattctgatgcagggtatcacatgttaaactaaaactttgatttt-aatatttgtgattgatcaacaattttcac |
24882955 |
T |
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| Q |
114 |
atctatctaacaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgg |
213 |
Q |
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| T |
24882956 |
atctatgtaacaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgg |
24883055 |
T |
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| Q |
214 |
gtaatatatatatgcatttcatttgaaagccattttgcatttatatataaacttattttctttgttgctttagggaattgactacttgaagtatgataat |
313 |
Q |
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| T |
24883056 |
gtaatatatatatgcatttcatttgaaagccattttgcatttatatataaacttattttctttgttgctttagggaattgactacttgaagtatgataat |
24883155 |
T |
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| Q |
314 |
tgtgagaataatgatgtaacccccaaagaaaggtacccacga |
355 |
Q |
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| T |
24883156 |
tgtgagaataatgatgtaacccccaaagaaaggtacccacga |
24883197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 32601638 - 32601544
Alignment:
| Q |
123 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggtaa |
217 |
Q |
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| T |
32601638 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggtaa |
32601544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 32591169 - 32591076
Alignment:
| Q |
123 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggta |
216 |
Q |
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| T |
32591169 |
acaattgctatgcagaaatcaaacttgtagtaaacgtatgcctggatcattgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
32591076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 32601442 - 32601397
Alignment:
| Q |
281 |
ctttagggaattgactacttgaagtatgataattgtgagaataatg |
326 |
Q |
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| T |
32601442 |
ctttagggagtcgactatttgaagtatgataattgtgaaaataatg |
32601397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 34594496 - 34594429
Alignment:
| Q |
281 |
ctttagggaattgactacttgaagtatgataattgtgagaataatgatgtaacccccaaagaaaggta |
348 |
Q |
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| T |
34594496 |
ctttagggaattgactatttgaagtatgataattgtgaaaacaatggtataagccctaaagaaaggta |
34594429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 34594696 - 34594626
Alignment:
| Q |
151 |
agtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggtaatata |
221 |
Q |
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| T |
34594696 |
agtaaacgcatgcctggatcactgggacatgaagaacaagatgctaaaacatttgcttcttgggtattata |
34594626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 34578983 - 34578890
Alignment:
| Q |
123 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggta |
216 |
Q |
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| T |
34578983 |
acaatttttatgcagaaatctaacttgtagtaaacgtatgcctggatcactgggacatgaaatacaagatgccaaaacatttgcttcttgggta |
34578890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 35124671 - 35124578
Alignment:
| Q |
123 |
acaatttctctgcagaaatcaaacatgcagtaaaagaatgccaggatcattagggcatgaagaacaagatgcaaaaacatttgcttcatgggta |
216 |
Q |
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| T |
35124671 |
acaatttttatgtagaaatctaacttgtagtaaacgcatgcctggatcactaggacatgaaatacaagatgccaaaacatttgcttcttgggta |
35124578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 34578787 - 34578745
Alignment:
| Q |
282 |
tttagggaattgactacttgaagtatgataattgtgagaataa |
324 |
Q |
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|||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
34578787 |
tttagggagttgactatttgaagtatgataattgtgaaaataa |
34578745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 35124478 - 35124433
Alignment:
| Q |
281 |
ctttagggaattgactacttgaagtatgataattgtgagaataatg |
326 |
Q |
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||||||||| | ||||| |||||||||||||||||||| ||||||| |
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| T |
35124478 |
ctttagggagtcgactatttgaagtatgataattgtgaaaataatg |
35124433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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