View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_11 (Length: 534)
Name: NF19973_high_11
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 379 - 530
Target Start/End: Complemental strand, 54727110 - 54726963
Alignment:
| Q |
379 |
ctttcagctacggtggttttgagatttatttgtttacacttctcatagtactctggacaattattgggaggatcacgcaaacacaacttaagcaatttgt |
478 |
Q |
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| T |
54727110 |
cttttagctacgatggttttgagatttatttgt----acttctcatagtactctggacaattattggaaggatcacgcaaacacaacttaagcaatttgt |
54727015 |
T |
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| Q |
479 |
aacattcatataagtgtgacctagaattgtaaccaccaacttcatctctctc |
530 |
Q |
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| T |
54727014 |
aacattcatataagtgtgacctagaattgtaaccaccaacttcatctttctc |
54726963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 54727400 - 54727282
Alignment:
| Q |
25 |
tacacagctaaaatgcataatgtaggttatctttgctacacagctttatgaaatggtttaaattagtaaatactactagtattttaattttaacagctta |
124 |
Q |
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| T |
54727400 |
tacacagctaaaatgcataatgtaggttatctttgctacacagctttatgaaatggtttaaattagtaaa------tagtattttaattttaacagctta |
54727307 |
T |
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| Q |
125 |
atgccaattatataatgaaaaatta |
149 |
Q |
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| T |
54727306 |
atgccaattatataatgaaaaatta |
54727282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 54727178 - 54727134
Alignment:
| Q |
332 |
caataacacacaaaccatggccacatacattctctcatcacggaa |
376 |
Q |
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| T |
54727178 |
caataacacacaaaccatggccacatacattctctcatcacggaa |
54727134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 54714834 - 54714739
Alignment:
| Q |
169 |
ttcacactcatagctttgatccttcacaatgctgggtcttgaatcaagtaaggaagggttgaaatgcatgcatcaacccaacaaaccacttgagaa |
264 |
Q |
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| T |
54714834 |
ttcacaatcatagctgtgatccttcacattgcctggtctcaaatcgagtatggaatggttgacatgcacgcatcaaaccaacaaatcactcgagaa |
54714739 |
T |
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