View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_15 (Length: 481)
Name: NF19973_high_15
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 54293022 - 54293473
Alignment:
| Q |
13 |
caaaggtgaagaggaagaatcaacgagttaaaggatgagggaataagagctgcaaaagtcattgtataacttgcaggatttgacagcatagatgtaaaga |
112 |
Q |
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| T |
54293022 |
caaaggtgaagaggaagaatcaacgagttaaaggatgagggaataagagctgcaaaagtcattgtatgacttgcaggatttgacagcatagatgtaaaga |
54293121 |
T |
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| Q |
113 |
aacatcaatactactctgcagaacctgacagcacaaaggcaaagggaaaactacacactactttgcggaatttgagattgataaaaaatctgtacagtag |
212 |
Q |
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| T |
54293122 |
aacatcaatactactctgcagaacctgacagcacaaaggcaaagggaaaactacacactactttgcggaatttgagattgataaaaaatctgtacagtag |
54293221 |
T |
|
| Q |
213 |
tactattaggtcattgtaaaattgatacatactgaaccgtattttcattgtaaaatattcnnnnnnnattcaagtttgtaactcttttttggacataatg |
312 |
Q |
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| T |
54293222 |
tactattaggtcattgtaaaattgatacatactgaaccgtattttcattgtaaaatattctttttttattcaagtttgtaactc-tttttggacataatg |
54293320 |
T |
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| Q |
313 |
aattgagattctatgttttattacaattctttttctctattttgtttcgtttcgaagacacaacaagtttcaaagaagccaacaaactttgattcaaaca |
412 |
Q |
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| T |
54293321 |
aattgagattctatgttttattacaattctttttctctattttgtttcgtttcgaagacgcaacaagtttcaaagaaaccaacaaactttgattcaaaca |
54293420 |
T |
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| Q |
413 |
aacaatatcatacaacttccacgatacaggcatattctaataggaaacaaaac |
465 |
Q |
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| T |
54293421 |
aacaatatcatacaacttccacgatacaggcatattctaataggaaacaaaac |
54293473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 23910589 - 23910656
Alignment:
| Q |
176 |
tgcggaatttgagattgataaaaaatctgtacagtagtactattaggtcattgtaaaattgatacata |
243 |
Q |
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| T |
23910589 |
tgcgaaatttgagattgatagaaaatttgtaaaatagtactattaggacattgtaaaattgatacata |
23910656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 14255622 - 14255674
Alignment:
| Q |
284 |
aagtttgtaactcttttttggacataatgaattgagattctatgttttattac |
336 |
Q |
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| T |
14255622 |
aagtttgtaactctttttagaacataatgaattgagattctttgtttcattac |
14255674 |
T |
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