View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_26 (Length: 371)
Name: NF19973_high_26
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 49656324 - 49656677
Alignment:
| Q |
19 |
atgatgtcaaaattgtacaaatatcaatgttgtttttccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttt |
118 |
Q |
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| T |
49656324 |
atgatgtcaaaattgtacaagtatcaacgttgtttttccaacaggttgtgttagaagtattaatctaaagttaaaagatgaagatagttgatttagcttt |
49656423 |
T |
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| Q |
119 |
tcttatgcgtaccnnnnnnnt-ctgaatagtgacta-------tagatacaaaattttaaaatcacacttgcccaaaaaaggaacttagtatcacagttc |
210 |
Q |
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| T |
49656424 |
tctgatgcgtaccaaaaaaaagctgaatagtgactaatgactatatatacaaaattttaaaatcacaattgcccaaaaaaggaacttagtatcacagttc |
49656523 |
T |
|
| Q |
211 |
tgttattacagtgaagattagattggataactatggactactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49656524 |
tgttattacagtgaagattagattggataactatggactactatatgatttgacgcgatagagatctcgcgttatcataggtttaagagaagggtcagag |
49656623 |
T |
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| Q |
311 |
tcagaggcattaaaagtcttatttgaatgagactcatttcattcattcatctca |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49656624 |
tcagaggcattaaaagtcttatttgaatgagactcatttcattcattcatctca |
49656677 |
T |
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