View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_28 (Length: 355)
Name: NF19973_high_28
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 32 - 339
Target Start/End: Original strand, 25623127 - 25623435
Alignment:
| Q |
32 |
ggttatgctcggtcacgtggcgtcggtgcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatt |
131 |
Q |
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||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623127 |
ggttatgctcggtcatgtggcgtcggagcttgtgtggtaactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatt |
25623226 |
T |
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| Q |
132 |
tgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcatactattggaatatccgatttcagccaagagtt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623227 |
tgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcatactattggaatatccgatttcagccaagagtt |
25623326 |
T |
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| Q |
232 |
gaagtgttttcaaaccgttacttgctttcaggttggtaccaaa-tcttacaatattttagttattgttttgatttgtatgatggcaaagtatttttaaaa |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623327 |
gaagtgttttcaaaccgttacttgctttcaggttggtaccaaagtcttacaatattttagttattgttttgatttgtatgatggcaaagtatttttaaaa |
25623426 |
T |
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| Q |
331 |
agcagttac |
339 |
Q |
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||||||||| |
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| T |
25623427 |
agcagttac |
25623435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 25603900 - 25604150
Alignment:
| Q |
18 |
gttatgcggctgacggttatgctcggtcacgtggcgtcggtgcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgc |
117 |
Q |
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| T |
25603900 |
gttatgcggctgatggttatgctcggtcacgtggcgtcggtgcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgc |
25603999 |
T |
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| Q |
118 |
ttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcatactattggaatatccgat |
217 |
Q |
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| T |
25604000 |
ttatagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggattcttcatcatactattggtgttcctgat |
25604099 |
T |
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| Q |
218 |
ttcagccaagagttgaagtgttttcaaaccgttacttgctttcaggttggt |
268 |
Q |
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|| || || ||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
25604100 |
tttagtcaggagttgaggtgttttcaaactgttacttgctttcaggttggt |
25604150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 5330066 - 5330214
Alignment:
| Q |
59 |
gcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggac |
158 |
Q |
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| T |
5330066 |
gcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggac |
5330165 |
T |
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| Q |
159 |
ctaactccaatgattatggaagtaacaggattcttcatcatactattgg |
207 |
Q |
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|||| || ||||||| ||| | ||| || |||||||||||||||||||| |
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| T |
5330166 |
ctaattctaatgattttgggactaatagaattcttcatcatactattgg |
5330214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 20434176 - 20434324
Alignment:
| Q |
59 |
gcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggac |
158 |
Q |
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|||||||||||||| || |||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||| | ||||| || |||||||||| |
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| T |
20434176 |
gcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggac |
20434275 |
T |
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| Q |
159 |
ctaactccaatgattatggaagtaacaggattcttcatcatactattgg |
207 |
Q |
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| || || ||||||| ||| | ||| || |||||||||||||||||||| |
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| T |
20434276 |
caaattctaatgattttgggactaatagaattcttcatcatactattgg |
20434324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 1877613 - 1877764
Alignment:
| Q |
56 |
ggtgcttgtgttgttactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtg |
155 |
Q |
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| T |
1877613 |
ggtgcatgtgttgttacttttaatgttggcggacttagcattcttaatgctattgctggttcttatagtgaagatcttccaattatatgcattgttggtg |
1877712 |
T |
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| Q |
156 |
gacctaactccaatgattatggaagtaacaggattcttcatcatactattgg |
207 |
Q |
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|| || |||||||||| ||||||||||| |||||| |||||||| ||||| |
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| T |
1877713 |
ccccaaattccaatgattttggaagtaacaagattctccatcataccattgg |
1877764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 4624837 - 4624928
Alignment:
| Q |
116 |
gcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcatactattgg |
207 |
Q |
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| T |
4624837 |
gcttacagtgaaaacttgccggtgatttgtattgttggaggacctaattctaatgactatggtactaacagaattcttcatcatactattgg |
4624928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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