View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_31 (Length: 341)
Name: NF19973_high_31
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_31 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 27801704 - 27801376
Alignment:
| Q |
14 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctga-ggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
112 |
Q |
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| T |
27801704 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctgaaggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
27801605 |
T |
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| Q |
113 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
212 |
Q |
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| T |
27801604 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
27801505 |
T |
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| Q |
213 |
gttggtgtaaaattattttctattggaaaaaatggtaaaaccggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
312 |
Q |
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| T |
27801504 |
gttggtgtaaaattattttctattggaaaaaatggtaaaatcggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
27801405 |
T |
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| Q |
313 |
ttggagagatgaagaaactataagggcat |
341 |
Q |
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| T |
27801404 |
ttggagagatgaagaaactataagggcat |
27801376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 27770861 - 27770799
Alignment:
| Q |
24 |
tccaaggaatgaggagaagaaacttctcaccagctgaggaacggcttcattgtcacgtctgaa |
86 |
Q |
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| T |
27770861 |
tccaaggaatgatgtgaagcaacttctcaccagctgagcaacggattcattgttatgtctgaa |
27770799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 26474834 - 26474886
Alignment:
| Q |
288 |
aaaggccactaaagccaagaataatttggagagatgaagaaactataagggca |
340 |
Q |
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| T |
26474834 |
aaagtccactaaagccaagaacaatttgaagtgttgaagcaactataagggca |
26474886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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