View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_34 (Length: 317)
Name: NF19973_high_34
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 10210712 - 10210445
Alignment:
| Q |
30 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
129 |
Q |
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| T |
10210712 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
10210613 |
T |
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| Q |
130 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga |
229 |
Q |
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| T |
10210612 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaaggga |
10210513 |
T |
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| Q |
230 |
atatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctc |
297 |
Q |
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| T |
10210512 |
atatgcatcaccaggtccaggagtttcatacaactagatgtatcaaaattgctctgtggtgtatcctc |
10210445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 10108453 - 10108665
Alignment:
| Q |
30 |
taaacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattcca |
129 |
Q |
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| T |
10108453 |
taaacataagtgcttatacacatcttaaacttttgtgaatcaggttctcagaatgcttgttatttatctgcttttcctgaacccattcttcacgattcca |
10108552 |
T |
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| Q |
130 |
ccatcgccgaccgatgccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatatt-aaaggaatggtggctaaggg |
228 |
Q |
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| T |
10108553 |
ccatcgccgaca----ccgtctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaaggaatggtggctaaggg |
10108648 |
T |
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| Q |
229 |
aatatgcatcaccaggt |
245 |
Q |
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| T |
10108649 |
aatatgcatcacaaggt |
10108665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 49 - 301
Target Start/End: Complemental strand, 10216476 - 10216235
Alignment:
| Q |
49 |
acatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttatcctgaacccattcttcacgattccaccatcgccgaccgatgccg |
148 |
Q |
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| T |
10216476 |
acatcttaaacttttgtgaattaggttctcagaatgcctgttatttatctgcttatcctgaacccatccttcaccattctatcatcacca---------- |
10216387 |
T |
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| Q |
149 |
tctttgtctcctaaagatatttccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtcca |
248 |
Q |
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| T |
10216386 |
tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca |
10216287 |
T |
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| Q |
249 |
ggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttag |
301 |
Q |
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| T |
10216286 |
ggagtttcatacagccagatgtatc-aaattgctctgtggtgtatcctcttag |
10216235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 9683170 - 9683065
Alignment:
| Q |
185 |
cagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctct |
284 |
Q |
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|||||||||||||| ||| |||||||||||||| |||| |||||||||||||| | ||||||| |||| ||||||||||||| |||||||||| |
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| T |
9683170 |
cagatgttgagtcatgtagacattaaaggaatggttgctaggggaatatgcatca------caaggagttccataaagccagatgtatc-aaattgctct |
9683078 |
T |
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| Q |
285 |
gtggtgtatcctc |
297 |
Q |
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| T |
9683077 |
gtggtttatcctc |
9683065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 9683495 - 9683423
Alignment:
| Q |
32 |
aacatatgtgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
104 |
Q |
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| T |
9683495 |
aacatatatgcttatatgcatcttaaactttcgtgtatcaggttctcagaatgccggttatttccctgcttat |
9683423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 10105184 - 10105248
Alignment:
| Q |
40 |
tgcttatacacatcttaaacttttgtgaatcaggtgctcagaatgcttgttatttatctgcttat |
104 |
Q |
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||||||| |||||||||| ||||||||||||||| | | ||||| |||||||| ||||||||| |
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| T |
10105184 |
tgcttatgtacatcttaaaattttgtgaatcaggttcgccaaatgcctgttatttctctgcttat |
10105248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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