View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_36 (Length: 304)
Name: NF19973_high_36
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 9657765 - 9658035
Alignment:
| Q |
16 |
ataatgccaaaccctcataattttgattccaatttgttaaatctggtatggccttacacccaacttttgttccaacaaaagaaaatggacacatgtgatt |
115 |
Q |
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| T |
9657765 |
ataatgccaaaccctcataattttgattc-aatttgttaaatctggtatggccttgcacccaacttttgttccaacaaaagaaaatggacacatgtgatt |
9657863 |
T |
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| Q |
116 |
tgtaagtgttgagaaacggttcactgtccaaaatgcagttactgttaataaaacatacaaaagatagagttagtttaattcatatattgattcatattgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657864 |
tgtaagtgttgagaaacggttcactgtccaaaatgcagttactgttaataaaacatacaaaagatagagttagtttaattcatatattgattcatattgc |
9657963 |
T |
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| Q |
216 |
agttgaattcaactgcagggcaatctcaatccatgtttttagtctgacataatacatgaagaatgtatgatc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657964 |
agttgaattcaactgcagggcaatctcaatccatgtttttagtctgacataatacatgaagaatgtatgatc |
9658035 |
T |
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