View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_high_38 (Length: 295)
Name: NF19973_high_38
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 3480988 - 3480713
Alignment:
| Q |
16 |
atgtatttcgtcgtaggatttctacacttttgttccctctcaatgcttcccttcaaaatgaagccgtccttgtcattgttccaaccaatgccatcagtat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3480988 |
atgtatttcgtcgtaggatttctacacttttgttccccctcaatgcttcccttcaaaatgaagccgtctttgtcattgttccaaccaatgccatcagtat |
3480889 |
T |
|
| Q |
116 |
cttacgattcatgcaatttgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatcc |
215 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480888 |
cttacaattcatgcaattcgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatcc |
3480789 |
T |
|
| Q |
216 |
caattcaatttgctgaatctcatggaattgagagttgtgaatctcgttgaatcgtatgatatgaattcagtcatgt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480788 |
caattcaatttgctgaatctcatggaattgggagttgtgaatctcgttgaatcgtatgatatgaattcagtcatgt |
3480713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 113 - 290
Target Start/End: Complemental strand, 3523870 - 3523692
Alignment:
| Q |
113 |
tatcttacgattcatgcaatttgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaa |
212 |
Q |
| |
|
||||| |||||||||| ||| ||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||| |
|
|
| T |
3523870 |
tatctcacgattcatgtgattaacatcttgatttgatacgatatcaaacacaattgatacatatcagagtgtgaatctcttttggacttctcatcatgaa |
3523771 |
T |
|
| Q |
213 |
tcccaattcaatttgctgaatctcatggaattgagagttgtgaatctc-gttgaatcgtatgatatgaattcagtcatg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||||||||| ||| |||| |||||||||||||| ||||| |
|
|
| T |
3523770 |
tcccaattcaatttgctgaatctcatggagttgggagatgtgaatctcagttaaatcacatgatatgaattcaatcatg |
3523692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 3535939 - 3535990
Alignment:
| Q |
28 |
gtaggatttctacacttttgttccctctcaatgcttcccttcaaaatgaagc |
79 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3535939 |
gtagggtttctacatttttgttccctctcagtgcttccctgcaaaatgaagc |
3535990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University