View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_43 (Length: 274)
Name: NF19973_high_43
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 40810030 - 40809774
Alignment:
| Q |
1 |
ctaaccttcgctcaattaaaatcccttacaattaaactcgctcactctttaattaaaatcggtttaaccaaaaacgacgtcgttctcttcctcgctccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40810030 |
ctaaccttcgctcaattaaaatcccttacaattaaactcgctcactctttaattaaaatcggtttaaccaaaaacgacgtcgttctcttcctcgctccta |
40809931 |
T |
|
| Q |
101 |
atagttatctctaccctgttttcttcctcgccgtcgcttccatcggcgccgtcgcttccaccgtaaatccacaatacaccaccgttgaagtttctaaaca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40809930 |
atagttatctctaccctgttttcttcctcgccgttgcttccatcggtgccgtcgcttccaccgtaaatccacaatacaccaccgttgaagtttctaaaca |
40809831 |
T |
|
| Q |
201 |
agctaaagattcaaatccgaaactcattatcaccgtcgctgaattatggcagaaagt |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40809830 |
agctaaagattcaaatccgaaactcattatcaccgtcgctgaattatgggagaaagt |
40809774 |
T |
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