View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_high_49 (Length: 248)
Name: NF19973_high_49
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 55076808 - 55076581
Alignment:
| Q |
8 |
ataattctgggcaacttgtgatcattcattcataaattgtgtatggtatatatgttgaaaagtgtattgtgctgctatatgctgaaaaattataatcgtt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55076808 |
ataagtctgggcaacttgtgatcattcattcataaattgtgtatgatatatatgttgaaaagtgtattgtgctgctatatgctgaaaaattataatcgtt |
55076709 |
T |
|
| Q |
108 |
tttgttcacaggatattcaacaagtcaagcttgtttataatcagaaactgagaacatcacagcctccataggatacaactatgcaggtcataatatatct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55076708 |
tttgttcacaggatattcaacaagtcaagcttgtttataatcagaaactgagaacatcacagcctccataggatacaactatgcaggtcataatatatct |
55076609 |
T |
|
| Q |
208 |
aaggtgcagttgattttggtcatgtatg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
55076608 |
aaggtgcagttgattttggtcatgtatg |
55076581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University