View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_58 (Length: 237)
Name: NF19973_high_58
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 31786306 - 31786126
Alignment:
| Q |
42 |
ctttaggttctctcaccacagctaaatttcatggcatgaagcttatattatttcctacttcacacttaaaaatataagtaaaaaaggtaatgtatttggt |
141 |
Q |
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| T |
31786306 |
ctttaggttctctcaccacagataaatttcatggcatgaagcttatattatttcctacttcacacttaaaaatataagtaaaaaaggtaatgtatttggt |
31786207 |
T |
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| Q |
142 |
tcaaatttggactaaatatatgtaccctcttatatttgaccaaacatactctatcactaacaaaatttgacacatctaagt |
222 |
Q |
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| T |
31786206 |
tcaaatttggactacatatatgtaccctcttatatttgaccaaacatactctatcagtaacaaaatttgacacatctaagt |
31786126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 31790725 - 31790665
Alignment:
| Q |
42 |
ctttaggttctctcaccacagctaaatttcatggcatgaagcttatattatttcctacttca |
103 |
Q |
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| T |
31790725 |
ctttaggttctctcaccacagctaaatttcatggcatgacgcttata-tatttcctaattca |
31790665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14950714 - 14950757
Alignment:
| Q |
1 |
tagccatagccaccccttgagcatgaaagcatccgcccctgctt |
44 |
Q |
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| T |
14950714 |
tagccatagccaccccttgagtatgaaagcatccgcccctgctt |
14950757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14160675 - 14160714
Alignment:
| Q |
1 |
tagccatagccaccccttgagcatgaaagcatccgcccct |
40 |
Q |
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| T |
14160675 |
tagccatagccaccccttgagtatgaaagcatccacccct |
14160714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40724192 - 40724232
Alignment:
| Q |
1 |
tagccatagccaccccttgagcatgaaagcatccgcccctg |
41 |
Q |
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| T |
40724192 |
tagccatagccaccccttgagtatgaaagcatccgcccctg |
40724232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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