View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_60 (Length: 236)
Name: NF19973_high_60
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_60 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 3638869 - 3638651
Alignment:
| Q |
18 |
ataattatctttcaaatgatgaaaagcctagaggaagacttatcattagtgagtcttactccataagaaaggaaattatgaaatatagtaagtgatgaac |
117 |
Q |
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| T |
3638869 |
ataattctctttcaaatgatgaaaagcctagaggaagacttatcattagtgaatcttactccataagaaaggaaattatgaaatatagtaagtgatgaac |
3638770 |
T |
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| Q |
118 |
tcccaattttctaactcattcactatttatatacatttggattggacaagaatagttttagtttttaaactcacctttggatcagatattatgattccca |
217 |
Q |
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| T |
3638769 |
tcccaattttctaactcattcactatttatatacatttggattggacaagaatagttttagtttttaaactcacctttggatcagatattatgattccca |
3638670 |
T |
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| Q |
218 |
taacataggcaaatagatc |
236 |
Q |
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| T |
3638669 |
taacataggccaatagatc |
3638651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 3647750 - 3647676
Alignment:
| Q |
158 |
attggacaagaatagttttagtttttaaactcacctttggatcagatattatgattcccataacataggcaaata |
232 |
Q |
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|||||| ||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
3647750 |
attggaaaagtatagttttggttttaaaactcacctgtggatcagatattatgattcccataacataggccaata |
3647676 |
T |
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