View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_high_72 (Length: 207)
Name: NF19973_high_72
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_72 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 34879569 - 34879737
Alignment:
| Q |
17 |
gcatagggtgatgcctgacaagaatggaagtagactatctattgcaagtttctataatccagttggtgaagctattatttctccagctcctaaactcttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879569 |
gcatagggtgatgcctgacaagaatggaagtagactatctattgcaagtttctataatccagttggtgaagctattatttctccagctcctaaactcttg |
34879668 |
T |
|
| Q |
117 |
tatccaagtaattactgctatggtgactatttggagctttatggaaaaactaagtttggtgataagggt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879669 |
tatccaagtaattactgctatggtgactatttggagctttatggaaaaactaagtttggtgataagggt |
34879737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University