View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_high_8 (Length: 580)
Name: NF19973_high_8
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 3931646 - 3932184
Alignment:
| Q |
9 |
ggagacttggcatagtattagacattcgattcgattgatacgatggaagacnnnnnnnncc-taacccctatatatgcaaaacaaaaaaggtcaagtact |
107 |
Q |
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| T |
3931646 |
ggagacttagcatagtattagacattcgattcgattgatacgatggaagacaaaaaaaaccctaacccctatatatgcaaaacaaaaaaggtcaagtact |
3931745 |
T |
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| Q |
108 |
agacttctgatcttaatcaagggagcaagtaacttactaaagatcagataaaatttctaagaataagacaaggttccttacaagatccctaaaaatgaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3931746 |
agacttctgatcttaatcaagggagcaagtaacttactaaagatcagataaaatttctaagaataagacaaggttccttacaagatccctaaaaatgaga |
3931845 |
T |
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| Q |
208 |
ccaatcatgtgtcgctaaaataacgcaaattatcctcatatattatgatatccatcactctctctgtctaagatattattcgtaaatatgttcaaacttg |
307 |
Q |
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| T |
3931846 |
ccaatcatgtgtcgctaaaataacgcaaattatcctcatatattatgatatccatcactctctctgtctaagatattattcgtaaatatgttcaaacttg |
3931945 |
T |
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| Q |
308 |
cactcaagctgcagctaactctaaagggacggacatagaacatggctggaaaaacaactctagggatggacatgccagagatgtctattg-tgtttgttt |
406 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3931946 |
cactcaagctgaagctaactctaaagggatggacatagaacatggctggaaaaacaactctagggatggacatgccagagatgtctattgttgtttgttt |
3932045 |
T |
|
| Q |
407 |
ccaaagttcaatgcaacattagctattgttgccgactatatccttaagttgcagtgggataaataggtggagtggcatgataaatagttaatgatattat |
506 |
Q |
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| T |
3932046 |
ccaaagttcaatgcaacattagctattgttgccaactatatccttaagttgcagtgagataaataggtggagtggcatgataaatagttaatgatattat |
3932145 |
T |
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| Q |
507 |
cgaaaaagagttctatcaaaagtaacataatttattgat |
545 |
Q |
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| T |
3932146 |
caaaaaagagttctatcaaaagtaacataatttattgat |
3932184 |
T |
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