View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19973_high_9 (Length: 539)

Name: NF19973_high_9
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19973_high_9
NF19973_high_9
[»] chr1 (9 HSPs)
chr1 (18-519)||(16499285-16499786)
chr1 (77-488)||(16442784-16443180)
chr1 (60-481)||(16438188-16438591)
chr1 (77-490)||(16427190-16427588)
chr1 (18-310)||(16416215-16416504)
chr1 (66-285)||(16417562-16417781)
chr1 (347-490)||(16416526-16416669)
chr1 (369-498)||(16419727-16419856)
chr1 (418-492)||(16432865-16432940)
[»] chr8 (3 HSPs)
chr8 (409-452)||(2032628-2032671)
chr8 (409-452)||(2053875-2053918)
chr8 (412-452)||(2021939-2021979)
[»] chr2 (1 HSPs)
chr2 (366-452)||(28713667-28713753)


Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 16499786 - 16499285
Alignment:
Q  18 catgttgtagagaaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaagggtttttgctcacgagtataa 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16499786 catgttgtagaggaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaaaggtttttgctcacgagtataa 16499687  T
Q  118 aattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcactgggatgctatgattcacaatctgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16499686 aattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcacttggatgctatgattcacaatctgaa 16499587  T
Q  218 aaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacatggatcttcatcaatgttagcaagatctatcacagcaatagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16499586 aaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcatgcacatggatcttcatcaatgttagcaagatctatcacagcaatagt 16499487  T
Q  318 ataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16499486 ataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatca 16499387  T
Q  418 acaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttctgaatctgccatgcctttctcttacttttcccttgtagtac 517  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16499386 acaagtcctttaacaccaagttttgtatcatcaaaagctttgagttcttttactctttctgaatctgccatgcctttctcttacttttcacttgtagtac 16499287  T
Q  518 ta 519  Q
    ||    
T  16499286 ta 16499285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 77 - 488
Target Start/End: Original strand, 16442784 - 16443180
Alignment:
Q  77 aattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttc 176  Q
    ||||||||||||||| ||||||||||   |||||||| ||| ||| ||| |||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  16442784 aattactattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaccttaccaccccatctttcatttc 16442883  T
Q  177 cttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacat 276  Q
     |||||  ||||||||||||||| |||||| |||||||| |||||||| | ||| |||||||||||||||||||| || || |||||||||| ||||||     
T  16442884 attcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatgtctctgatgcatctctaacactctcgacgacccttttgcatgcacac 16442983  T
Q  277 ggatcttcatcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggta 376  Q
    |||||||||  ||||||||||||||||||||||| |||||      ||| || |||||    ||     |||||||||||||||||||||||||||||||    
T  16442984 ggatcttcaagaatgttagcaagatctatcacaggaatag------ttgttgtgtccc----ct-----gactctgatgccttcttgattttatcaggta 16443068  T
Q  377 gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttc 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  16443069 gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaatcttttagttcttttattctttc 16443168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 60 - 481
Target Start/End: Complemental strand, 16438591 - 16438188
Alignment:
Q  60 tgaggtatatagagcaaaattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcacc 159  Q
    |||||| ||||||  ||| ||||||||||||||||||||| |||| || ||||| ||||||||||| || ||||||||||||||||||||||| || |||    
T  16438591 tgaggtgtatagattaaagttactattatacataaagggtctttgttcgcgagtgtaaaattccttttttacctcactatcttgctcaaaaaaacttacc 16438492  T
Q  160 actccatctttcatttccttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaa 259  Q
    || |||||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||| || | ||| || |||||||||||||||||||||||||    
T  16438491 accccatctttcatttcattcaaagtactcactgggatgccatgatttacaatctgaaaaaacccaaatgtctccgatgcatctctaacactttcaacaa 16438392  T
Q  260 cccttttgcgtgcacatggatcttcatcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgcctt 359  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| | || |||||||||||||| ||| ||||  |||||                      
T  16438391 cccttttgcgtacacatggatctttatcaatgttagcaagatctataaaaggaatagtataatttgttgcatccccggactc------------------ 16438310  T
Q  360 cttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagttttt 459  Q
     ||| | | ||||||| ||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  16438309 gttggtgtgatcaggtggatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagctttt 16438210  T
Q  460 agttcttttactctttctgaat 481  Q
    |||  ||||| |||||||||||    
T  16438209 agtgtttttattctttctgaat 16438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 77 - 490
Target Start/End: Original strand, 16427190 - 16427588
Alignment:
Q  77 aattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttc 176  Q
    ||||||||||||||| ||||||||||   |||||||| ||| ||| ||| |||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  16427190 aattactattatacacaaagggttttctttcacgagtgtaatatttctttttgacctcactatcttgctcaaaaaaacttaccaccccatctttcatttc 16427289  T
Q  177 cttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacat 276  Q
     |||||  ||||||||||||||| |||||| |||||||| |||||||| | | | ||||||||||||||||||||||| || |||||||||||||||||     
T  16427290 attcaacgtactcactgggatgccatgatttacaatctggaaaaatccaaatatctctgatgcatctctaacactttcgacgacccttttgcgtgcacac 16427389  T
Q  277 ggatcttcatcaatgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggta 376  Q
    |||||||||  ||||||||||||||||||||||| |||||      ||| || |||||    ||     |||||||||||||||||| |  ||||||||     
T  16427390 ggatcttcaagaatgttagcaagatctatcacaggaatag------ttgttgtgtccc----ct-----gactctgatgccttcttggtgctatcaggtg 16427474  T
Q  377 gatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttc 476  Q
    | ||||| || ||| ||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16427475 gttgatagaaaatacgagggacctttgtaatccctgcatcaacaagtcctctaacaccaagttttgtttcatcaaaagcttttagttcttttactctttc 16427574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 16416215 - 16416504
Alignment:
Q  18 catgttgtagagaaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattatacataaagggtttttgctcacgagtataa 117  Q
    ||||||| | || ||||||||||||||| |||    |||| ||| |||||||||||||| |||||||| || |||||| ||||| || ||||| ||||||    
T  16416215 catgttgcaaaggaaagaatctttccaagtagc---agctggtgcggtatatagagcaatattactataatgcataaaaggtttatgttcacgtgtataa 16416311  T
Q  118 aattccttcttgacctcactatcttgctcaaaaaatctcaccactccatctttcatttccttcaaaatactcactgggatgctatgattcacaatctgaa 217  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||||||||||||||| |||| |||||||||| |||| |||||| ||||||||||    
T  16416312 aattccttcttgacctcactatcttgctcaaaaaaacttttcaccccatctttcatttcctccaaagtactcactggaatgccatgatttacaatctgaa 16416411  T
Q  218 aaaatcccattgtttctgatgcatctctaacactttcaacaacccttttgcgtgcacatggatcttcatcaatgttagcaagatctatcacag 310  Q
    |||| || | ||| |||||||||||||||| |||||||||||||||||| |||||  |||||||||  ||||||||||| |||||||||||||    
T  16416412 aaaacccaaatgtctctgatgcatctctaatactttcaacaaccctttttcgtgcgaatggatctttttcaatgttagcgagatctatcacag 16416504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 66 - 285
Target Start/End: Original strand, 16417562 - 16417781
Alignment:
Q  66 atatagagcaaaattactattatacataaagggtttttgctcacgagtataaaattccttcttgacctcactatcttgctcaaaaaatctcaccactcca 165  Q
    |||||||  ||||||||||||||||| ||| ||| | || |||||||| ||||||| ||| || |||||||||||||||||||| || ||    || |||    
T  16417562 atatagattaaaattactattatacagaaaaggtctatgttcacgagtgtaaaatttcttttttacctcactatcttgctcaaagaaactttttacccca 16417661  T
Q  166 tctttcatttccttcaaaatactcactgggatgctatgattcacaatctgaaaaaatcccattgtttctgatgcatctctaacactttcaacaacccttt 265  Q
    ||||| |||| || |||| |||||| |||||||| |||||| |||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||    
T  16417662 tctttaattttctccaaagtactcagtgggatgccatgatttacaatctgaaaaaacccaaatgtctctgatgcatctctaacactttcaacaacccttt 16417761  T
Q  266 tgcgtgcacatggatcttca 285  Q
    | ||||||||||||||||||    
T  16417762 tccgtgcacatggatcttca 16417781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 347 - 490
Target Start/End: Original strand, 16416526 - 16416669
Alignment:
Q  347 actctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttc 446  Q
    ||||||||||||||||| |  ||||| |  | ||||| || ||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  16416526 actctgatgccttcttggtgctatcacggggttgatagaaaatacgagggatctttgtaatccctgcatcgacaagtcctttaacaccaagttttgtttc 16416625  T
Q  447 atcaaaagtttttagttcttttactctttctgaatctgccatgc 490  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||    
T  16416626 atcaaaagcttttagttcttttactctttctaaatcttccatgc 16416669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 498
Target Start/End: Original strand, 16419727 - 16419856
Alignment:
Q  369 atcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttctttt 468  Q
    ||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||  |||     
T  16419727 atcaggtggatgatagaacatatgagggatcttggtaatccctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagctttcagtattttc 16419826  T
Q  469 actctttctgaatctgccatgcctttctct 498  Q
    ||||| ||||||||| ||||  ||||||||    
T  16419827 actctctctgaatcttccatagctttctct 16419856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 16432865 - 16432940
Alignment:
Q  418 acaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactc-tttctgaatctgccatgcct 492  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| ||||| ||||||||    
T  16432865 acaagtcctttaacaccaagttttttttcatcaaaagctttaagttcttttactcttttctaaatcttccatgcct 16432940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Complemental strand, 2032671 - 2032628
Alignment:
Q  409 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 452  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  2032671 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa 2032628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Complemental strand, 2053918 - 2053875
Alignment:
Q  409 cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 452  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  2053918 cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa 2053875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 2021979 - 2021939
Alignment:
Q  412 gcatcaacaagtcctttaacaccaagttttgtttcatcaaa 452  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  2021979 gcatcaacaagtcctttgacaccatcttttgtttcatcaaa 2021939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 452
Target Start/End: Original strand, 28713667 - 28713753
Alignment:
Q  366 tttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa 452  Q
    |||||||||| |||||| |||||    ||||||||||  ||| |||  ||||||||| ||||||||||||  |||||||||||||||    
T  28713667 tttatcaggtggatgatgaaataaggtagggattttgagaataccttgatcaacaaggcctttaacaccagcttttgtttcatcaaa 28713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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