View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19973_low_1 (Length: 910)

Name: NF19973_low_1
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19973_low_1
NF19973_low_1
[»] chr1 (10 HSPs)
chr1 (401-901)||(49713989-49714493)
chr1 (409-898)||(49710350-49710844)
chr1 (16-292)||(49726317-49726594)
chr1 (409-901)||(49682741-49683234)
chr1 (401-813)||(49687735-49688148)
chr1 (608-878)||(49215065-49215339)
chr1 (415-568)||(49215347-49215500)
chr1 (415-680)||(49728411-49728676)
chr1 (409-605)||(49725064-49725260)
chr1 (342-396)||(49726275-49726329)
[»] chr6 (6 HSPs)
chr6 (427-563)||(31201386-31201522)
chr6 (421-560)||(31189573-31189712)
chr6 (442-563)||(31214165-31214286)
chr6 (418-563)||(31224434-31224579)
chr6 (428-551)||(31145522-31145645)
chr6 (428-551)||(31171835-31171958)
[»] scaffold0394 (1 HSPs)
scaffold0394 (431-481)||(2115-2165)
[»] chr7 (1 HSPs)
chr7 (406-476)||(33305159-33305229)
[»] chr4 (1 HSPs)
chr4 (431-481)||(15063369-15063419)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 401 - 901
Target Start/End: Complemental strand, 49714493 - 49713989
Alignment:
Q  401 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 500  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  49714493 caaatatggatacaatgctttcttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgagg 49714394  T
Q  501 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatcc 600  Q
    ||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  49714393 tttaatgtcaaaatgtaagattctagtgttacagcctctgtgcaagtactctaacccacgagcaacaccaactgcaatatcatacaatgttttgcaatcc 49714294  T
Q  601 aattgatgatcatccttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatattagcgcctttttagaaccat 700  Q
    ||||| ||||| ||  | |||||| | || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  49714293 aattggtgatcgtctgttaatggattcttttcttcatatattaacttttcaagggatccattaggcatgaattcatatattagtgcctttttagaaccat 49714194  T
Q  701 ccaaacaaaatcccaaaagtctaacaacgttgacatgcgaagttccgctgatactcgcaaattggttgatgaaatcttcaccatcgcctttagattcact 800  Q
    ||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||||||  || ||||| |||||| |    
T  49714193 ccaaacagaaccccaaaagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttgatgaaatcttcactgtcacctttggattcatt 49714094  T
Q  801 taaaaccttcactaca----tacgttcgtcatctaacttccctctgtatacacttccatatcctccctgacctaatttgtttttgaaagagtttgttatt 896  Q
    ||||||||||||  ||    ||   || |||| |||||| ||| ||||||||||||||||||||||||| || |||||  ||||||||||||| ||||||    
T  49714093 taaaaccttcaccgcaacggtattctcatcatgtaacttacctttgtatacacttccatatcctccctggcccaatttacttttgaaagagttcgttatt 49713994  T
Q  897 ttctt 901  Q
    |||||    
T  49713993 ttctt 49713989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 409 - 898
Target Start/End: Complemental strand, 49710844 - 49710350
Alignment:
Q  409 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcc-tcatgaagtaatatattatgaggttttatg 507  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||   ||||  ||||||||||||||||||||||||    
T  49710844 gatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatg 49710745  T
Q  508 tcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattgat 607  Q
    |||||||| || |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||      
T  49710744 tcaaaatgcaagattctagtgttgcagcctctgtgcaagtactctagtccacgagcaaccccaactgcaatatcatacaatgttttgcaatccaactggc 49710645  T
Q  608 gatcatccttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatattagcgcctttttagaaccatccaaaca 707  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  49710644 gatcatccttcaatggatttttctcttcgtatatgaacttctcaagagatccattaggcatgaattcgtatattagtgcctttttagaaccatccaaaca 49710545  T
Q  708 aaatcccaaaagtctaacaacgttgacatgcgaagttccgctgatactcgcaaattggttgatgaaatcttcaccatcgcctttagattcacttaaaacc 807  Q
     || ||||||||||||||||||||||||||||||||||  || |||||||||| ||  || || |||||||| || |||||||| | ||||||||||||     
T  49710544 gaaccccaaaagtctaacaacgttgacatgcgaagttctactaatactcgcaacttcattaataaaatcttcgccgtcgccttttggttcacttaaaact 49710445  T
Q  808 ttcactac----atacgttcgtcatctaacttccctctgtatacacttccatatcctccctgacctaatttgtttttgaaagagtttgttatttt 898  Q
    |||||| |    ||||| || |||| |||||||||| ||||||||||||| || ||||| || |||||||||||| | |||||||| ||||||||    
T  49710444 ttcactgcaacaatacgctcatcatttaacttccctttgtatacacttccgtaccctccttgtcctaatttgtttctaaaagagttagttatttt 49710350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 49726594 - 49726317
Alignment:
Q  16 aatttctccgagaaatccacaggtaattgaagatggacagatacatgatgatagtagcagttgttgtataaggaggcatgaaaacaagaagaggtgttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49726594 aatttctccgagaaatccacaggtaattgaagatggacagatacatgatgatagtagcagttgttttataaggaggcatgaaaacaagaagaggtgttgt 49726495  T
Q  116 gagaacatgataaataatttgtgtggttctgtaatctatagtgagtaataaataatgtttcagttgatatgatatactaaatatatgccataagacggaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49726494 gagaacatgataaataatttgtgtggttctgtaatctatagtgagtaataaataatgtttcaattgatatgatatactaaatatatgccataagacggaa 49726395  T
Q  216 gcagtgcagagaaacagagaatggtcttgctatgcagccatttttgactgagtgtgtg-tttggcaaggtcataatag 292  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49726394 gcagtggagagaaacagagaatggtcttgctatgcagccatttttgactgagtgtgtgttttggcaaggtcataatag 49726317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 409 - 901
Target Start/End: Complemental strand, 49683234 - 49682741
Alignment:
Q  409 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 508  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||    
T  49683234 gatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgt 49683135  T
Q  509 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattgatg 608  Q
    |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||  ||||||| ||||||||       
T  49683134 caaaatgtaagattctagtgttgcagcctctgtgcatgtactctaacccacgagcaacgccaacagcaatatcatacaacattttgcattccaattggcc 49683035  T
Q  609 atcatccttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatattagcgcctttttagaaccatccaaacaa 708  Q
    |||||||||||||||| |||||   || ||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||     
T  49683034 atcatccttcaatggatttttc---tcgtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacag 49682938  T
Q  709 aatcccaaaagtctaacaacgttgacatgcgaagttccgctgatactcgcaaattggttgatgaaatcttcaccatcgcctttagattcacttaaaacct 808  Q
    || ||||||||||||| ||||||||||||||||||||   |||||||||||| ||  || |||||||| || || |||||||| ||||||||||||||||    
T  49682937 aaccccaaaagtctaagaacgttgacatgcgaagttctattgatactcgcaacttcattaatgaaatcatccccgtcgccttttgattcacttaaaacct 49682838  T
Q  809 tcactac----atacgttcgtcatctaacttccctctgtatacacttccatatcctccctgacctaatttgtttttgaaagagtttgttattttctt 901  Q
    ||||  |    | ||| || |||  |||| ||||| |||||||||||||  | ||||| || |||||||||||| | ||||||||||||||||||||    
T  49682837 tcacagcaacaacacgctcatcacgtaacctccctttgtatacacttccgaaccctccttggcctaatttgtttctaaaagagtttgttattttctt 49682741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 401 - 813
Target Start/End: Complemental strand, 49688148 - 49687735
Alignment:
Q  401 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 500  Q
    |||| |||||||| || |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  49688148 caaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgagg 49688049  T
Q  501 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgcc-aactgcaatatcatacaatgttttgcaatc 599  Q
    |||||||||||||||||| ||||||||||||||||||||  | || ||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  49688048 ttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgcccaactgcaatattatacaatgttttgcaatc 49687949  T
Q  600 caattgatgatcatccttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatattagcgcctttttagaacca 699  Q
    ||||||  ||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||| ||||||||| |||||||| |||||||||||||||    
T  49687948 caattgccgatcatccttcaatggatttttctcttcgtatatgaacttctcaagatatccattagacatgaattcgtatattagtgcctttttagaacca 49687849  T
Q  700 tccaaacaaaatcccaaaagtctaacaacgttgacatgcgaagttccgctgatactcgcaaattggttgatgaaatcttcaccatcgcctttagattcac 799  Q
    |||||||| || |||||||| |||||||| |||| ||| |||||||  ||||||||||||| ||  || |||||||||||||| || ||||| |||||||    
T  49687848 tccaaacagaaccccaaaagcctaacaacattgatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccgtcaccttttgattcac 49687749  T
Q  800 ttaaaaccttcact 813  Q
    ||||||||||||||    
T  49687748 ttaaaaccttcact 49687735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 608 - 878
Target Start/End: Complemental strand, 49215339 - 49215065
Alignment:
Q  608 gatcatccttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatattagcgcctttttagaaccatccaaaca 707  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||  |||||||||    
T  49215339 gatcatccctcaatggatttttctcttcatatatgaacttctcaagagatccattaggcatgaattcatatattaatgcctttttagaattatccaaaca 49215240  T
Q  708 aaatcccaaaagtctaacaacgttgacatgcgaagttccgctgatactcgcaaattggttgatgaaatcttcaccatcgcctttagattcacttaaaacc 807  Q
     || |||||||||||||||||||||||||| |||||||  || |||||||||| ||  || || |||||||| ||||||||||| ||||||||||||||     
T  49215239 gaaccccaaaagtctaacaacgttgacatgtgaagttctactaatactcgcaacttcattaataaaatcttcgccatcgccttttgattcacttaaaact 49215140  T
Q  808 ttcactac----atacgttcgtcatctaacttccctctgtatacacttccatatcctccctgacctaatttgttt 878  Q
    |||||| |    ||||| || |||| |||||||||| ||||||||| ||| || |||||||||||||||||||||    
T  49215139 ttcactgcaactatacgctcatcatgtaacttccctttgtatacacctccgtaccctccctgacctaatttgttt 49215065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 415 - 568
Target Start/End: Complemental strand, 49215500 - 49215347
Alignment:
Q  415 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 514  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||   |||||||||||||||||| ||||||||||||    
T  49215500 atactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaat 49215401  T
Q  515 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgc 568  Q
    | || ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49215400 gcaagattctagtgttacagcctctgtgcaagtactctaatccacgagcaacgc 49215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 415 - 680
Target Start/End: Complemental strand, 49728676 - 49728411
Alignment:
Q  415 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 514  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||  || || || ||||| || |  || |||||||||||||||||||| |||||||    
T  49728676 atactttcttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaat 49728577  T
Q  515 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattgatgatcatc 614  Q
    |||| ||| |||| ||||| ||| ||||||  ||||| ||||| ||||||||||||| ||||||||  || |  |||||||||  ||||||| |||        
T  49728576 gtaaaattttagtattgcaacctttgtgcagatactctaatccccgagcaacgccaattgcaatattgtagacagttttgcaactcaattgaagattgag 49728477  T
Q  615 cttcaatggacttttctcttcatatatgaacttctcaagcgatccattaggcatgaattcatatat 680  Q
    ||||||||||  ||| | ||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  49728476 cttcaatggatctttgttttcatatatgaacttctcaagtgatccattaggcatgtagtcatatat 49728411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 409 - 605
Target Start/End: Complemental strand, 49725260 - 49725064
Alignment:
Q  409 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 508  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||  |  |  || ||||||||||||||||    
T  49725260 gataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgt 49725161  T
Q  509 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattg 605  Q
    ||||||| || |||||||| ||||||||| |||||| ||| || |  || ||||| || |||| ||| ||||  ||||| |||| ||||||||||||    
T  49725160 caaaatgcaaaattctagtattgcagcctttgtgcaggtattctagccctcgagctacaccaattgcgatatagtacaacgtttggcaatccaattg 49725064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
Q  342 aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat 396  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49726329 aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat 49726275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 427 - 563
Target Start/End: Original strand, 31201386 - 31201522
Alignment:
Q  427 cttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctag 526  Q
    |||||||| | ||| |||||||||||||||||||| ||||| || |||| |||||  |  |  |||||||| ||||||||||| |||||||| |||| ||    
T  31201386 cttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgag 31201485  T
Q  527 tgttgcagcctctgtgcaagtactccaatccacgagc 563  Q
    || | || ||||| ||||||||||| | |||||||||    
T  31201486 tggtacatcctctatgcaagtactctagtccacgagc 31201522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 421 - 560
Target Start/End: Original strand, 31189573 - 31189712
Alignment:
Q  421 tcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaata 520  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||| || |||| |||||  |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  521 ttctagtgttgcagcctctgtgcaagtactccaatccacg 560  Q
    |||| ||| | || ||||| ||||||||||| | ||||||    
T  31189673 ttcttgtggtacatcctctatgcaagtactctagtccacg 31189712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 442 - 563
Target Start/End: Complemental strand, 31214286 - 31214165
Alignment:
Q  442 gcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagtgttgcagcctctgt 541  Q
    ||||||||||||||||| || ||||| || ||||  ||||  | ||| |||||||| |||||||| ||||||||||| |||| |||  |||| ||||| |    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattcgagtactgcatcctctat 31214187  T
Q  542 gcaagtactccaatccacgagc 563  Q
    ||| ||||||||| || |||||    
T  31214186 gcaggtactccaaccctcgagc 31214165  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 563
Target Start/End: Complemental strand, 31224579 - 31224434
Alignment:
Q  418 ctttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgta 517  Q
    |||||||| ||  |||||| ||| |||||||||||||||||||| || || || ||||  ||||  |  |  || || || |||||||||||||||||||    
T  31224579 ctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgta 31224480  T
Q  518 atattctagtgttgcagcctctgtgcaagtactccaatccacgagc 563  Q
    | ||||||||| | || ||||  ||||||||||| | |||||||||    
T  31224479 aaattctagtggtacatcctccatgcaagtactctagtccacgagc 31224434  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 31145522 - 31145645
Alignment:
Q  428 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 527  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31145522 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31145621  T
Q  528 gttgcagcctctgtgcaagtactc 551  Q
    | | || ||||| |||||||||||    
T  31145622 ggtacatcctctatgcaagtactc 31145645  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 31171835 - 31171958
Alignment:
Q  428 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 527  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31171835 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31171934  T
Q  528 gttgcagcctctgtgcaagtactc 551  Q
    | | || ||||| |||||||||||    
T  31171935 ggtacatcctctatgcaagtactc 31171958  T

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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 2115 - 2165
Alignment:
Q  431 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 481  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  2115 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 2165  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 406 - 476
Target Start/End: Complemental strand, 33305229 - 33305159
Alignment:
Q  406 atggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatc 476  Q
    |||||||| || || || || ||| ||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  33305229 atggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 15063419 - 15063369
Alignment:
Q  431 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 481  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  15063419 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 15063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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