View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_10 (Length: 536)
Name: NF19973_low_10
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 208 - 517
Target Start/End: Complemental strand, 14433086 - 14432777
Alignment:
| Q |
208 |
gttaagctgggctattgtgaaggacattgaagttgctaagaagatggtgacatttgtgcaatcaagctcaatgggcgtatcaaaagaatcccaaacaaga |
307 |
Q |
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| T |
14433086 |
gttaagctgggctattgtgaaggacattgaagttgctaagaagatggtgacatttgtgcaatcaagctcaatgggcgtatcaaaagaatcccaaacaaga |
14432987 |
T |
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| Q |
308 |
gcagctaagatcattggagtgatttgtgatggttaccaaaatttcaagtcaattgaatctgaactcttctttgaatatagcaaacgtctcatgagagaaa |
407 |
Q |
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| T |
14432986 |
gcagctaagatcattggagtgatttgtgatggttaccaaaatttcaagtcaattgaatctgaactcttctttgaatatagcaaacgtctcatgagagaaa |
14432887 |
T |
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| Q |
408 |
gatgggagaattttagaggagctgttgaacaaagcaaggtcttcactgtaaccaagtatccaagggcgtactgtaacttcaccaatgagatatctgaaac |
507 |
Q |
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| T |
14432886 |
gatgggagaattttagaggagctgttgaacaaagcaaggtcttcactgtaaccaagtatccaagggcgtactgtaacttcaccaatgagatatctgaaac |
14432787 |
T |
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| Q |
508 |
ataccctagt |
517 |
Q |
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| T |
14432786 |
ataccctagt |
14432777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 14433293 - 14433119
Alignment:
| Q |
1 |
taaagggaaattgattcatgacttggcctattattggccacaatacactcctattacttatgaggctgaccatgatgtaatgctcttcacattctccaaa |
100 |
Q |
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| T |
14433293 |
taaagggaaattgattcatgacttggcctattattggccacaatacactcctattacttatgaggctgaccatgatgtaatgctcttcacattctccaaa |
14433194 |
T |
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| Q |
101 |
tgcactggtcatgctggttcccgtatagggtgagttcgtaaattaattgtacaccgttagattaagagtgacaaa |
175 |
Q |
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| T |
14433193 |
tgcactggtcatgctggttcccgtatagggtgagttcgtaaattaattgtacaccgttagattaagagtgacaaa |
14433119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 222 - 447
Target Start/End: Complemental strand, 14441162 - 14440934
Alignment:
| Q |
222 |
ttgtgaaggacattgaagttgctaagaagatggtgacatttgtgcaatcaagctcaatgggcgtatcaaaagaatcccaaacaagagcagctaagatcat |
321 |
Q |
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| T |
14441162 |
ttgtgaaggacattgaagttgctaagaagatgatgagattcatgcacctaagttccattggggtgtcaaaagaatcccaaattcgagctgctaagatcat |
14441063 |
T |
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| Q |
322 |
tggagtgatttgtgatggttaccaaaatttcaagtcaattgaatctg---aactcttctttgaatatagcaaacgtctcatgagagaaagatgggagaat |
418 |
Q |
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| T |
14441062 |
tgaagtgatttgtgatggttacgaaaatttcaagtccgttggatctgatcacctcttttttaattataccaaaaaactcatgatagaaaggtgggagaaa |
14440963 |
T |
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| Q |
419 |
tttagaggagctgttgaacaaagcaaggt |
447 |
Q |
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|||| |||||| |||| |||||||||| |
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| T |
14440962 |
tttaagggagctattgagaaaagcaaggt |
14440934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 14441622 - 14441490
Alignment:
| Q |
3 |
aagggaaattgattcatgacttggcctattattggccacaatacactcctattacttatgaggctgaccatgatgtaatgctcttcacattctccaaatg |
102 |
Q |
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|||||||| | ||| |||| ||||||||||| ||||||||||||||||| |||||| | || | | || ||||| | ||||||||| || |||||||| |
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| T |
14441622 |
aagggaaactaatttatgatttggcctattactggccacaatacactccaattactcaccagattaatcaagatgttacgctcttcacgttatccaaatg |
14441523 |
T |
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| Q |
103 |
cactggtcatgctggttcccgtatagggtgagt |
135 |
Q |
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||| ||||||| |||||||||||| |||||||| |
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| T |
14441522 |
caccggtcatggtggttcccgtatcgggtgagt |
14441490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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