View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_12 (Length: 530)
Name: NF19973_low_12
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 24413086 - 24413455
Alignment:
| Q |
1 |
tcatgtttgctgattctctcctgcccatcattcttctaagtcttccaaatgtctctatcttcaatggtttagtcattgcatct-------gcatctcatt |
93 |
Q |
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| T |
24413086 |
tcatgtttgctgaatccaccatgcccatcattcttctaagtctttcaaatgtcactatcttcaatggcttagtcattgcatctgcaatctgcatctcagt |
24413185 |
T |
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| Q |
94 |
cttgcaatgctccataatcagctttcctttagtaactagctccctaaggaagtgaaatcttgcttctatgtgtttacttattccatgtgacacagggtgc |
193 |
Q |
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| T |
24413186 |
cttgcaatgctccagaatcagctttcctttggtaacttgatccctgaggaagtgaaaccttgcttctatgtgtttacttattccatgtgacacaaggtgc |
24413285 |
T |
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| Q |
194 |
tttgctaactttattgcagattggttatcaactttcagtgtcactgcttcctcctttccttcttctttgatgcttagctcagtcatcaatgcatctagct |
293 |
Q |
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| T |
24413286 |
tttcctaactttattgtagattggttatcaacctttagtgtcactgcttcttcctttccttcttcattgatgcttag-tcagtcatcaatgcatctagct |
24413384 |
T |
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| Q |
294 |
aagcagattgacaaacactcattgcaacaaaaatgtattcagactcacaggttgatagagcaaccgctaat |
364 |
Q |
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| T |
24413385 |
aagcagcccgacaagcactcattgcaacgacaatgtattcagactcacaagtagatagagcaaccactaat |
24413455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 411 - 514
Target Start/End: Original strand, 24413453 - 24413556
Alignment:
| Q |
411 |
aatatcctgcagtactcttcctatcatctttatcaccacaccagtctgcatctgagtatccaaccaacttaacaactgaatcatctttctgagttggaag |
510 |
Q |
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| T |
24413453 |
aatatcctgcagtactcttcttatcatctttatcaccacaccagtctgcatctgggtatccaaccaacttagcaactgaatcatctttcagagttggaag |
24413552 |
T |
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| Q |
511 |
tagt |
514 |
Q |
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|||| |
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| T |
24413553 |
tagt |
24413556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 8531576 - 8531507
Alignment:
| Q |
22 |
tgcccatcattcttctaagtcttccaaatgtctctatcttcaatggtttagtcattgcatctgcatctca |
91 |
Q |
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||||||||||||||||||| || ||||||||||| |||||||||| ||||| ||||||||||||||||| |
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| T |
8531576 |
tgcccatcattcttctaagcctctcaaatgtctctgtcttcaatggcttagttattgcatctgcatctca |
8531507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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