View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_14 (Length: 506)
Name: NF19973_low_14
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Original strand, 2525388 - 2525869
Alignment:
| Q |
10 |
ataattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaatta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525388 |
ataattctcatgaaatagttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaatta |
2525487 |
T |
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| Q |
110 |
ctactatagtttgtgttgggaaattactaacatatgatcacatttgctaactataattctacttcactttttctttagcagatgtaagtagaaattagta |
209 |
Q |
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| T |
2525488 |
ctactatagtttgtggtgggaaattac-aacatatgatcacatttgctaactataattctacttcaccttttctttagcaaatgtaagtagaaattagta |
2525586 |
T |
|
| Q |
210 |
aattataactatgtaaataattatatattactatttttctaatagagataatatcatatatgaaagcaaaatagaaggggcactttcactgcacacataa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525587 |
aattataactatgtaaataattatatattactatttttctaatagagataatatcatatatgaaagcaaaatagaaggggcactttcactgcacacataa |
2525686 |
T |
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| Q |
310 |
aaagtatcgtcaactaaatatattcaa-nnnnnnnnnnnnnnnnnnnncttatatttaagaccgaagtatacaagtattcaaagatttttctcataagct |
408 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || |
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| T |
2525687 |
aaagtatcgtcaattaaatatattcaattttttttgataatttttttccttatatttaagaccgaagtatacaaatattcaaagatttttcttataaact |
2525786 |
T |
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| Q |
409 |
actttcatgagaagagtttgaccaccaatttcttaacacacacatacttgt-tagaaaaagatagcattgttttacaacattc |
490 |
Q |
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| T |
2525787 |
actttcatgaggagagtttgagcaccaatttcttaacacacgcatacttgtaaaaaaaaagatagcattgtttcacaacattc |
2525869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 32925719 - 32925798
Alignment:
| Q |
27 |
gttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaa |
106 |
Q |
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|||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32925719 |
gttgaagaagttaatgtaccaaactgcagcttcactaatactacaaatggagcaagaatcaaaacatttcctgtgagtaa |
32925798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 11658262 - 11658182
Alignment:
| Q |
26 |
agttgaagaagtttatgtacggaactgcagcttcattgatactacaaatggagcaagaatcaagacatttcctgtgagtaa |
106 |
Q |
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|||||||||||||||||||| || || ||||||| | | |||||||||||||| |||||||||||||||||||||||||| |
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| T |
11658262 |
agttgaagaagtttatgtacataattgtagcttcactaacactacaaatggagctagaatcaagacatttcctgtgagtaa |
11658182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 13559004 - 13559043
Alignment:
| Q |
67 |
ctacaaatggagcaagaatcaagacatttcctgtgagtaa |
106 |
Q |
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| T |
13559004 |
ctacaaatggagcaagaataaagacatttccggtgagtaa |
13559043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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