View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_15 (Length: 504)
Name: NF19973_low_15
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 15 - 487
Target Start/End: Complemental strand, 52547414 - 52546944
Alignment:
| Q |
15 |
cagagacttgtcacaacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaa |
114 |
Q |
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| T |
52547414 |
cagagacttgtcacaacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaa |
52547315 |
T |
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| Q |
115 |
atgttgttgatacttacttgtgtcatcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattca |
214 |
Q |
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| T |
52547314 |
atgttgttgatacttacttgt--catcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattca |
52547217 |
T |
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| Q |
215 |
tttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaa |
314 |
Q |
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| T |
52547216 |
tttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaa |
52547117 |
T |
|
| Q |
315 |
acttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgacatggtacaaggtatgattaaatttt |
414 |
Q |
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| T |
52547116 |
acttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgacatggtacaaggtatgattaaatttt |
52547017 |
T |
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| Q |
415 |
caacatatgttttatttctgtcacatggatctgtgatcacctgcctctgaatgtattctgaatcattatttgt |
487 |
Q |
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| T |
52547016 |
caacatatgttttatttctgtcacatgaatctgtgatcacctgcctctgaatgtattctgaatcattatttgt |
52546944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 5232740 - 5232788
Alignment:
| Q |
354 |
acaaggaccatcattggctaaaagacaacctttgacatggtacaaggta |
402 |
Q |
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| T |
5232740 |
acaaggatcatcattggctaaaaaacaacctttgacatggtacaaggta |
5232788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 419
Target Start/End: Original strand, 17128594 - 17128727
Alignment:
| Q |
286 |
cagattggtctcaagggtgaaaccttaaaacttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctt |
385 |
Q |
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| T |
17128594 |
cagattggactgaaaggtgaatccttaaaccttcataccacaagtggaagttcttctgttaaatggacacaaggatcatttttatctaaaaaacaacctt |
17128693 |
T |
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| Q |
386 |
tgacatggtacaaggtatgattaaattttcaaca |
419 |
Q |
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| T |
17128694 |
tgacatggtacaaggtaagaatgagttttcaaca |
17128727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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