View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_17 (Length: 450)
Name: NF19973_low_17
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 33900228 - 33899796
Alignment:
| Q |
1 |
ttgatatagtttccattagttgagtgtagcttataatctttggatcataacgaatttctgcttcttcagttgccaaggccacttgtgctatttgcacccc |
100 |
Q |
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| T |
33900228 |
ttgatatagtttccattagttgagtgtagcttataatctttggatcataacgaatttctgcttcttcagttgccaaggccacttgtgctatttgcacccc |
33900129 |
T |
|
| Q |
101 |
ttgaagggattgaagaactgattgcacgttagaggagcaagaagtacaagtcatgccccctatgtgtactctacatatttgaaatgaagtgttgttggaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33900128 |
acgaagggattgaagaactgattgcacgttggaggagcaagaagtacaagtcatgccccctatgtgtactctacatatttgaaatgaagtgttgttggaa |
33900029 |
T |
|
| Q |
201 |
ctatcatcttccatggatttggcctcaaatccagcatcttcaatggcgtcacgtatgctctcttcctgtgtacnnnnnnnnnntagtttaaatgaaaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33900028 |
ctatcatcttccatggatttggcctcaaatccagcatcttcaatggcgtcacgtatgctctcttcctgtgtac--aaaaaaaatagtttaaatgaaaaga |
33899931 |
T |
|
| Q |
301 |
gagaaaaacaacattttgtatgaacatttgtttgcaaaatatggtttcacaagtgtcgttcggtatgagttcttcaagtatttaggagtaatttcggtgg |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33899930 |
gagaaaaagaacattttgtatgaacatttgtttgcaaaatatggtttcacaagtgtggttcggtatgagttcttcaagtatttaggagtaatttcggtgg |
33899831 |
T |
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| Q |
401 |
tggcttatttgaaaggcaaagaacgatcaaatttt |
435 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33899830 |
tggcttatttgaaaggcaaagaacgatcaaatttt |
33899796 |
T |
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