View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_18 (Length: 436)
Name: NF19973_low_18
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 65 - 428
Target Start/End: Original strand, 27801035 - 27801399
Alignment:
| Q |
65 |
ttgattgatagcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaacc |
164 |
Q |
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| T |
27801035 |
ttgattgatagcgcattaaatgactgaggaattggaaacactaagtgaaagcagaatatcaaaattacttggggagggaattgacaaggttctccaaacc |
27801134 |
T |
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| Q |
165 |
acctttggaactcgattaccctctg-taattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtg |
263 |
Q |
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| T |
27801135 |
acctttggaactcgattaccctctgttaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtg |
27801234 |
T |
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| Q |
264 |
aaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttcaattgac |
363 |
Q |
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| T |
27801235 |
aaccctcatgaggttggtttgtcacaagctttagttgatcagatcttcatttttatttttgttttgctttctgttaagtaatcattattgttcaattgac |
27801334 |
T |
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| Q |
364 |
aaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctc |
428 |
Q |
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| T |
27801335 |
aaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctc |
27801399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 424
Target Start/End: Complemental strand, 26475135 - 26474868
Alignment:
| Q |
157 |
tccaaaccacctttggaactcgattaccctctgtaattggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagca |
256 |
Q |
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| T |
26475135 |
tccaaacaacatttggaactcgtctacctgcggttattggaggatcctacacttttgtgccaacaactatttcaattattttggctggtagatatagtga |
26475036 |
T |
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| Q |
257 |
cattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnnnnngctttctgttaagtaatcattattgttc |
356 |
Q |
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||||||||| ||||||||||||||||| || |||| || ||||||||| ||||||| | ||||| ||| ||||||||| |||| |
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| T |
26475035 |
cattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttcatttttatttttgttttgttttctattatgtaatcattgttgtct |
26474936 |
T |
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| Q |
357 |
aattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttca |
424 |
Q |
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| T |
26474935 |
aattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttca |
26474868 |
T |
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