View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_2 (Length: 814)
Name: NF19973_low_2
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 708; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 10 - 796
Target Start/End: Complemental strand, 41705995 - 41705206
Alignment:
| Q |
10 |
ataatactgaacgaggaattgtactcacgatggagtnnnnnnnnn-ggtctaattgcagatgactcttcgcagtgtatacaccctgaatagagttgaatc |
108 |
Q |
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| T |
41705995 |
ataatactgaacgagggattgtactcacgatggagtaaaaaaaaaaggtctaattgcagatgactcttcgcagcgtatacatcctgaatagagttgaatc |
41705896 |
T |
|
| Q |
109 |
ttgtattttaccgagggctattttggttcctctacctgtgtacctactactgatatcaattgtttgggctattttgctgcaacatggttctgcatcgaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41705895 |
ttgtattttaccgagggctattttggttcctctacctgtgtacctactactgatatcaattgtttgggctattttgctgcaacatggttctgcgtcgaat |
41705796 |
T |
|
| Q |
209 |
ttgcattcttttcttatagtcaagtcatttggctcaaacattcttttgctgcattatctttcatcatacacagttagttgcagccttagatacatgaaaa |
308 |
Q |
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| T |
41705795 |
ttgctttcttttcttatagtcaagtcatttggctcaaacattcttttgctgcattatctttcatcatacacagttagttgcagccttagatacatgaaaa |
41705696 |
T |
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| Q |
309 |
atatttgtaaggtactcaacgattttaatatttaagacttctaatgaaatactaaaggtgtgaagtacctaatagaagaaaatgaaaatgcgttttgaat |
408 |
Q |
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| T |
41705695 |
atatatgtaaggtactcaacgattttaatatttaagacttctaatgaaatactaaaggtgtgaagtacctaatagaagaaaatgaaaatgcgttttgaat |
41705596 |
T |
|
| Q |
409 |
ttaagtcaatcccactgtcatagtaaatttgaatgaaataatgcggtgttagttcagaacattgaattaatataattgcttataaccgatgtttatagtt |
508 |
Q |
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| T |
41705595 |
ttaagtcaatcccactgtcatagtaaatttgaatgaaataatgcggtgttagttcagaacattgaattaatataattgcttataaccgatgtttatagtt |
41705496 |
T |
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| Q |
509 |
atcaatatgtttcagctgatagattctcttagttttatgaacctaacctttttactaaacaaaccatgccgagtccagctttaagta--gggaaaaccat |
606 |
Q |
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| T |
41705495 |
atcaatatgtttcagctgatagattctcttagttttatgaacctaacctttttactaaacaaaccatgccgagtccagctttaagtagggggaaaaccat |
41705396 |
T |
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| Q |
607 |
aggcccatgtgagcgggtctggtctattcatacccctcagtcgaccatgctcggcctttgtgattgaggcggtgtgtgacatgtgccactcagacacatg |
706 |
Q |
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| T |
41705395 |
aggcccatgtcagcgggtctggtctattcatacccctcagtcgaccatgctcggcctttgtgattgaggtggtgtgtgacatgtgccactcagacacatg |
41705296 |
T |
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| Q |
707 |
cacgatgcatgcttcacccctacgcacagtcctggtagtcctcatgcaaacgtgttttcatccccaaatgtttatttcagggtgctatat |
796 |
Q |
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| T |
41705295 |
cacgatgcatgcttcacccctacgcacagtcctggtagtcctcatgcaaatgtgttttcatccccaaatgtttatttcagggtgctatat |
41705206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 41715805 - 41715719
Alignment:
| Q |
57 |
tctaattgcagatgactcttcgcagtgtatacaccctgaatagagttgaatcttgtattttaccgagggctattttggttcctctac |
143 |
Q |
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||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
41715805 |
tctaactgcagatgactcttggcggtgtatacaccctgataagagttgaatcttgtatttagctgagggctattttggttcctctac |
41715719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 41648040 - 41647973
Alignment:
| Q |
208 |
tttgcattcttttcttatagtcaagtcatttggctcaaacattcttttgctgcattatctttcatcat |
275 |
Q |
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| T |
41648040 |
tttgcattcttttcttgtagcaaaggcatttgtctcaaacatggttttggtgcattatccttcatcat |
41647973 |
T |
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