View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_20 (Length: 425)
Name: NF19973_low_20
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_20 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 37231639 - 37231226
Alignment:
| Q |
13 |
aatatatatttggatctagtatcactatagctatccttatcacctgtggaaggtnnnnnnntaagctgaactcatgaataatggaacagttcattcacta |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
37231639 |
aatatatatttggatctagtatcactatagctatctttatcacctatgggaggtaaaaaa-taagttgaactcatgaataatggaacagttcattcacta |
37231541 |
T |
|
| Q |
113 |
tatttaagaggtaagggtcatgcaaggaatttgagtacgaaagttgtacatataccatctttagttgaaggtgacatagaatcttctggtggcaatttag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37231540 |
tatttaagaggtaagggtcatgcaaggaatttgagtacgaaagttgtacatataccatctttagttgaaggtgacatagaatcttctggtggcaatttag |
37231441 |
T |
|
| Q |
213 |
actcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcatactcctcgaatacatattccagcagcaactaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37231440 |
actcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcatactcctcgaatacatattccagcagcaactaa |
37231341 |
T |
|
| Q |
313 |
acttctagctaagtgacctga--ttatatatatagaaattaaagttcagagaggcacttagctttctttgaattctcatatgactgtgaacatgcaaaaa |
410 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37231340 |
acttctagctaagtgacctgattttatatatatagaaattaaagttcagagaggcacttagctttctttgaattttcatatgactgtgaacatgcaaaaa |
37231241 |
T |
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| Q |
411 |
taaatagtcatcaat |
425 |
Q |
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|||||| |||||||| |
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| T |
37231240 |
taaatattcatcaat |
37231226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 74 - 425
Target Start/End: Complemental strand, 37228090 - 37227734
Alignment:
| Q |
74 |
taagctgaactcatgaataatggaacagttcattcactatatttaagaggtaagggtcatgcaaggaatttgagtacgaaagttgtacatataccatctt |
173 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37228090 |
taagttgagctcatgaataatggaacagttcattcactatatttaagaggtaagggtcatgcaaggaatttgagtacgaaagttgtacatataccatctt |
37227991 |
T |
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| Q |
174 |
tagttgaaggtgacatagaatcttctggtggcaatttagactc---ttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcag |
270 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37227990 |
tagttgaaggtgacattgaatcttctggtggcaatttagactcttcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcag |
37227891 |
T |
|
| Q |
271 |
aaccatgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgat--tatatatatagaaattaaagttcagagaggcact |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37227890 |
aaccatgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgattatatatatatagaaattaaagttcagagaggcact |
37227791 |
T |
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| Q |
369 |
tagctttctttgaattctcatatgactgtgaacatgcaaaaataaatagtcatcaat |
425 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37227790 |
tagctttctttgaattctcatatgactatgaacatgcaaaaataaatagtcatcaat |
37227734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 163 - 425
Target Start/End: Complemental strand, 37216563 - 37216293
Alignment:
| Q |
163 |
tataccatctttagttgaaggtgacatagaatcttctggtggcaatttagactcttct---ccattcttcttgcgaaagtatctaacatatatacaaatt |
259 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
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| T |
37216563 |
tataccatctttagttgaaggtgtcatagaatcttctggtggaaatttagactcttcttctccattcttctttcgaaagtatctaacatatatacaaagt |
37216464 |
T |
|
| Q |
260 |
gctaatagcagaaccatgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgattatata--tatagaaattaaagttc |
357 |
Q |
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||||| ||||||||||||| ||||| |||| |||||||||| ||||||| |||| |||| | ||||| ||||||| |||||||||||||| || |
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| T |
37216463 |
aataataacagaaccatgcatgatcctccaatagatattccagctataactaaaattctgtctaaatcacctgcttatatatatatagaaattaaaggtc |
37216364 |
T |
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| Q |
358 |
agagaggcacttagctttctttgaattctcatatgact---gtgaacatgcaaaaataaatagtcatcaat |
425 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
37216363 |
agagaggcacttagctttctttgaattctcatatgattaacgtgaacatgcaaaaataaatagtcatcaat |
37216293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 163 - 425
Target Start/End: Complemental strand, 37222587 - 37222318
Alignment:
| Q |
163 |
tataccatctttagttgaaggtgacatagaatcttctggtggcaatttagact---cttctccattcttcttgcgaaagtatctaacatatatacaaatt |
259 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||||| | |
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| T |
37222587 |
tataccatctttagttgaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagt |
37222488 |
T |
|
| Q |
260 |
gctaatagcagaaccatgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgattatatatatagaaattaaagttcag |
359 |
Q |
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||||| |||||||||||||| ||||| |||| |||||||||| | | |||||||||| ||||| ||||||| |||||||||||||||||||| || |
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| T |
37222487 |
aataataacagaaccatgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctgcttatatatatagaaattaaa--tctt |
37222390 |
T |
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| Q |
360 |
agaggcacttagctttctttgaattctcatatg---actgtg---aacatgcaaaaataaatagtcatcaat |
425 |
Q |
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||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |
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| T |
37222389 |
agaggcacttagctttctttgaattctcatatgattaatgtgaacaacatgcaaaaataaatagtcatcaat |
37222318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 37441424 - 37441340
Alignment:
| Q |
202 |
tggcaatttagactcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcatactcctc |
287 |
Q |
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|||||||||||| || ||| ||||||| || |||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
37441424 |
tggcaatttagattcctctgcattcttttt-cgaaagtatctagtatatatacaaattgctaataacagaaccatgcatattcctc |
37441340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 37386091 - 37386242
Alignment:
| Q |
202 |
tggcaatttagactcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcatactcctcgaatacatattcca |
301 |
Q |
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||||||||||||||| | | ||||||| || ||||||||| || ||||||||| ||||||||||| ||||||| ||||| ||||| | || |
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| T |
37386091 |
tggcaatttagactcctttgcattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccgtgcatgttcctccga---------ca |
37386181 |
T |
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| Q |
302 |
gcagcaactaaacttctagctaagtgacctgattatatatatagaaattaaagttcagaga |
362 |
Q |
| |
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|||| | ||||||| |||||||| ||||||| ||||||| ||||||||| ||| ||||||| |
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| T |
37386182 |
gcagtagctaaactcctagctaaatgacctgcttatatagatagaaatttaagctcagaga |
37386242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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