View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_21 (Length: 415)
Name: NF19973_low_21
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_21 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 16396229 - 16396643
Alignment:
| Q |
1 |
ttaaagtattcagggaagtcaatttccctatctgatggggcaagcttgtcaatgagtcacaacctcttaaagacaagttttgcagacgttttaagcgtgt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16396229 |
ttaaagtatttagggaagtcaatttccctatctgacggggcaagcttgtcaatgagtcacaatctcttaaagacaagttttgcagacgttttaagcgtgt |
16396328 |
T |
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| Q |
101 |
caaaccaccaggcaacttttgcagagacacacaaccgtctaacttcaagacttccaaattgcaaagcttgcaaagggaatttggaagatttttgaagcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16396329 |
caaaccaccaggcaacttttgcagagacacacaaccgtctaacttcaagacttccaaattgcaaagcttgcaaagggaatttggaagatttttgaagcga |
16396428 |
T |
|
| Q |
201 |
ccttcagaaatatctaagtatcttagatattttagacgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16396429 |
ccttcagaaatatctaagtatcttagatattttagacgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaat |
16396528 |
T |
|
| Q |
301 |
ttaatacctgaggtgaaagttgaccagcttcatagacatcaaaattaaactccatgtaggttttcaatgatttgacatggtgcaactgaattgaattgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16396529 |
ttaatacctgaggtgaaagttgaccagcttcatagacatcaaaattaaactccatgtaggttttcaatgatttgacatggtgcaactgaattgaattggc |
16396628 |
T |
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| Q |
401 |
ttccgcaaatgagtt |
415 |
Q |
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| T |
16396629 |
ttccgcaaatgagtt |
16396643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 15453985 - 15453604
Alignment:
| Q |
1 |
ttaaagtattcagggaagtcaatttccctatctgatggggcaagcttgtcaatgagtcacaacctcttaaagacaagttttgcagacgttttaagcgtgt |
100 |
Q |
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||||||| || |||||||| || |||||||| ||| ||||||||||||||| |||||||||| | | || |||| | | ||||| |||||||||||| |
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| T |
15453985 |
ttaaagtctttagggaagttaacttccctatatgagggggcaagcttgtcagtgagtcacaatcaatcaaggacagctgtcgcagagcttttaagcgtgt |
15453886 |
T |
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| Q |
101 |
caaaccaccaggcaacttttgcagagacacacaaccgtctaacttcaagacttccaaattgcaaagcttgcaaagggaatttggaagatttttgaagcga |
200 |
Q |
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| T |
15453885 |
caaactatcaggcagcttttgtagaaaataacaatggtctagattcaagacttccaaattgcaaagcttgcaaattgattttggaagagtatcaaagtga |
15453786 |
T |
|
| Q |
201 |
ccttcagaaatatctaagtatcttagatattttagacgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaat |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||| ||||||||||||||||| | |
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| T |
15453785 |
cctccagaaatatctaagtatcttagatattttagacggccaattgaagtagacaaattgtttagtccattcatcaaaagtacccgtaaagaataacact |
15453686 |
T |
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| Q |
301 |
ttaatacctgaggtgaaagttgaccagcttcatagacatcaaaattaaactccatgtaggttttcaatgatttgacatggtg |
382 |
Q |
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| T |
15453685 |
ccaatacctgaggtgaaagttgtcccgcgtcaaacacatcaaaattccactccatgtaggtcttcaatgaattgacatggtg |
15453604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 37 - 401
Target Start/End: Original strand, 16402857 - 16403221
Alignment:
| Q |
37 |
ggggcaagcttgtcaatgagtcacaacctcttaaagacaagttttgcagacgttttaagcgtgtcaaaccaccaggcaacttttgcagagacacacaacc |
136 |
Q |
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|||||||||||| | ||| |||||||||||||||||||| | ||| ||| |||||||| ||| |||||| ||||||||||||| ||| |||| | |
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| T |
16402857 |
ggggcaagcttgatagtgaatcacaacctcttaaagacaaatgttggagagcttttaagcatgttaaaccatcaggcaacttttgtagattataacaagc |
16402956 |
T |
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| Q |
137 |
gtctaacttcaagacttccaaattgcaaagcttgcaaagggaatttggaagatttttgaagcgaccttcagaaatatctaagtatcttagatattttaga |
236 |
Q |
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| T |
16402957 |
atctaacttcaagacttgcaaattgtaaagcttgcaaagcgattttggaaggctattgaagctaccttcagaaatatctaaatatctaaaatattttaga |
16403056 |
T |
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| Q |
237 |
cgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaatttaatacctgaggtgaaagttgaccagcttcataga |
336 |
Q |
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| T |
16403057 |
ccgccaattgaagtaggcaatttgtttagtctattgctcaaaagtacccgtaaagaataacatttcaatacctgaggtgaaagttgtccagcatcaaaca |
16403156 |
T |
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| Q |
337 |
catcaaaattaaactccatgtaggttttcaatgatttgacatggtgcaactgaattgaattgact |
401 |
Q |
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||| ||||| | ||| ||||| |||||||| ||| ||||||||||||| |||||||||||| |
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| T |
16403157 |
cattgaaattctccgccagataggtcttcaatgacttggcatggtgcaactgtattgaattgact |
16403221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 395
Target Start/End: Original strand, 17927294 - 17927546
Alignment:
| Q |
137 |
gtctaacttcaagacttccaaattgcaaagcttgcaaagggaatttggaagatttttgaagcgaccttcagaaatatctaagtatcttagatattttaga |
236 |
Q |
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|||||| ||||| || | ||||||||||||| | ||||| || | ||||||| ||||||| || | ||||||||||||||||||||||||||||| | |
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| T |
17927294 |
gtctaatttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttttgaacattccatgagaaatatctaagtatcttagatattttaaa |
17927393 |
T |
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| Q |
237 |
cgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaatttaatacctgaggtgaaagttgaccagcttcataga |
336 |
Q |
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|||||||| |||| |||||| |||||||| | | ||| |||||||| |||||||| | | || |||| |||||||||||||| ||||| |||| | |
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| T |
17927394 |
cgaccaatcgaagctgacaaaatgtttagtttgttgctccgaagcacccttaaagaattaaatttcaatatttgaggtgaaagttggccagcatcattg- |
17927492 |
T |
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| Q |
337 |
catcaaaattaaactccatgtaggttttcaatgatttgacatggtgcaactgaattgaa |
395 |
Q |
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||||| |||| |||||||| ||||| || ||||||||||||||||| |||||| |
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| T |
17927493 |
-----aaattccactctatgtaggtcttcaaggagttgacatggtgcaactggattgaa |
17927546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 15346795 - 15346835
Alignment:
| Q |
216 |
aagtatcttagatattttagacgaccaattgaagacgacaa |
256 |
Q |
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| T |
15346795 |
aagtaccttagatattttaaacgaccaattgaagacgacaa |
15346835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 15335425 - 15335531
Alignment:
| Q |
216 |
aagtatcttagatattttagacgaccaattgaagacgacaaattgtttagtctatgactcaaaagcacccgtaaagaataacaatttaatacctgaggtg |
315 |
Q |
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| T |
15335425 |
aagtaccttagatactttagactaccaattgaagatgacaacttttttcttctttcaaagtcaagcacccgtaaataataacatttcaatacatgaggtg |
15335524 |
T |
|
| Q |
316 |
aaagttg |
322 |
Q |
| |
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||||||| |
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| T |
15335525 |
aaagttg |
15335531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 15354131 - 15354167
Alignment:
| Q |
216 |
aagtatcttagatattttagacgaccaattgaagacg |
252 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |
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| T |
15354131 |
aagtaccttagatattttaaacgaccaattgaagacg |
15354167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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