View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_22 (Length: 406)
Name: NF19973_low_22
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 10653657 - 10654027
Alignment:
| Q |
21 |
agctaaagaaatcatggttagtttactactgtttgtcaaggtttttaaaaattcaaaattcttagttgtattgtctccgaaattgttacgttctagattt |
120 |
Q |
| |
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||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
10653657 |
agctatagaaatcacggttagtttactacagtttgtcaaggtttttaaaaattctaaatccttagttgtattgtctcctaaattgttaaattctagattt |
10653756 |
T |
|
| Q |
121 |
agccattgaagattatgtaaattccctagaattggaacttgtccgaccaatttatttc---cacttaattcgagttcttttagggaagaagcatttgtaa |
217 |
Q |
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| T |
10653757 |
agccgttgaagatcatgtaaattccccagacttggaacttgtccgagcaaattattttgatcagataagtcgagttcttttagggaagaagcatttgcaa |
10653856 |
T |
|
| Q |
218 |
tggaaatagggattgtacctgtgaattgattgtatgcaatatagaaacataaaagattggagagggttttgaagatatatgatggaagaggtccattaaa |
317 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||| ||||||||| |
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| T |
10653857 |
tggaaatagggattgtacctgagaattgattggatgcaatatagaaacattgaagattggaaagggtgttgaacatatttgatggaagagatccattaaa |
10653956 |
T |
|
| Q |
318 |
gtcattgacagttactgagatataagtaagatatgacatattataaaaacaagaatgaaatgtaccagata |
388 |
Q |
| |
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| T |
10653957 |
tttattgagtgttactgagatataagtaagagatgacatattataaaaacaagaatgaaatgtaccagata |
10654027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 384
Target Start/End: Original strand, 10661573 - 10661906
Alignment:
| Q |
51 |
gtttgtcaaggtttttaaaaattcaaaattcttagttgtattgtctccgaaattgttacgttctagatttagccattgaagattatgtaaattccctaga |
150 |
Q |
| |
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| T |
10661573 |
gtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaatttgtttgatcctagatttagtcgttgaagattatgtagcttccctaga |
10661672 |
T |
|
| Q |
151 |
attggaacttgtccgaccaatttatttccacttaattcgagttcttttagggaagaagcatttgtaatggaaatagggattgtacctgtgaattgattgt |
250 |
Q |
| |
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|||||||||||||||| || || |||| |||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||| |||| ||| |
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| T |
10661673 |
cttggaacttgtccgacaaaattgtttcgacttaagtcgagttgtagaagggaagaagcatttgcaatggaaatagggattgtacctgaaaattcatttc |
10661772 |
T |
|
| Q |
251 |
atgcaatatagaaacataaaagattggagagggttttgaagatatatgatggaagaggtccattaaagtcattgacagttactgagatataagtaagata |
350 |
Q |
| |
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| | || |||| || ||||||||||||||| ||||| |||| |||||||||| ||||||||| |||||| |||||||| ||| ||| | |
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| T |
10661773 |
ttccgattgcgaaatattgaagattggagagggtgttgaacatattggatggaagagatccattaaaatcattgggtccaactgagatcccagttagaga |
10661872 |
T |
|
| Q |
351 |
tgacatattataaaaacaagaatgaaatgtacca |
384 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||| |
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| T |
10661873 |
tgacatattataaagacaagaaggaaatgaacca |
10661906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 7191738 - 7191529
Alignment:
| Q |
39 |
tagtttactactgtttgtcaaggtttttaaaaattcaaaattcttagttgtattgtctccgaaattgttacgttctagatttagccattgaagattatgt |
138 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| || |||| |||||| | ||||| || ||| |||| | |||||||||| || | |||||| |||| |
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|
| T |
7191738 |
tagtttactacagtttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtttagctctagatttaaccgtcgaagatcatgt |
7191639 |
T |
|
| Q |
139 |
aaattccctagaattggaacttgtccgaccaatttatttccacttaattcgagttcttttagggaagaagcatttgtaatggaaatagggattgtacctg |
238 |
Q |
| |
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| T |
7191638 |
aacttccctagacttggaacttgtccgaccaaattgttttgatctaagtcaagattaaatagggaagaagcatttgaaatggaaatagggattgtacctg |
7191539 |
T |
|
| Q |
239 |
tgaattgatt |
248 |
Q |
| |
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||||||||| |
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|
| T |
7191538 |
agaattgatt |
7191529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 10563680 - 10563551
Alignment:
| Q |
119 |
ttagccattgaagattatgtaaattccctagaattggaacttgtccgaccaatttatttccacttaattcgagttcttttagggaagaagcatttgtaat |
218 |
Q |
| |
|
||||||| | ||||| ||||| ||| ||||| ||||||||||||| ||||| | ||| | ||| |||||| ||| |||||||||||||||| ||| |
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|
| T |
10563680 |
ttagccagtaaagatcttgtaacttctctagacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaat |
10563581 |
T |
|
| Q |
219 |
ggaaatagggattgtacctgtgaattgatt |
248 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |
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| T |
10563580 |
ggaaatagggattggacctgagaattgatt |
10563551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 10742343 - 10742387
Alignment:
| Q |
204 |
agaagcatttgtaatggaaatagggattgtacctgtgaattgatt |
248 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
10742343 |
agaagcatttgcaatggaaatagggattggacctgtgaattgatt |
10742387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 10610345 - 10610234
Alignment:
| Q |
137 |
gtaaattccctagaattggaacttgtccgaccaatttatttccacttaattcgagttcttttagggaagaagcatttgtaatggaaatagggattgtacc |
236 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| ||||| || ||| || ||| || | | || ||||||||||||||||| |||||||| |||||||| ||| |
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| T |
10610345 |
gtaacttctctagacttggaacttgtccaaccaaattgttttgacctaaatcaattatttgtagggaagaagcatttgcaatggaaacagggattggacc |
10610246 |
T |
|
| Q |
237 |
tgtgaattgatt |
248 |
Q |
| |
|
|| ||||||||| |
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|
| T |
10610245 |
tgagaattgatt |
10610234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 10764705 - 10764817
Alignment:
| Q |
136 |
tgtaaattccctagaattggaacttgtccgaccaatttatttccacttaattcgagttcttttagggaagaagcatttgtaatggaaatagggattgtac |
235 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| ||| | || || ||| || || | ||||||||||| ||| |||| ||||||||||| |
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|
| T |
10764705 |
tgtaaattccctagacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagaagcatttgcaatcgaaacagggattgtac |
10764804 |
T |
|
| Q |
236 |
ctgtgaattgatt |
248 |
Q |
| |
|
||| ||||||||| |
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|
| T |
10764805 |
ctgagaattgatt |
10764817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 10579436 - 10579393
Alignment:
| Q |
343 |
gtaagatatgacatattataaaaacaagaatgaaatgtaccaga |
386 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
10579436 |
gtaagagatgacatattataaagacaagaaagaaatgtaccaga |
10579393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 10590207 - 10590250
Alignment:
| Q |
343 |
gtaagatatgacatattataaaaacaagaatgaaatgtaccaga |
386 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10590207 |
gtaagagatgacatattataaagacaagaaagaaatgtaccaga |
10590250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 10599515 - 10599479
Alignment:
| Q |
350 |
atgacatattataaaaacaagaatgaaatgtaccaga |
386 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10599515 |
atgacatattataaagacaagaaggaaatgtaccaga |
10599479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 12956652 - 12956602
Alignment:
| Q |
198 |
tagggaagaagcatttgtaatggaaatagggattgtacctgtgaattgatt |
248 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| |
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|
| T |
12956652 |
tagggcagaagcatttgcaatcgaaatagggattggacctgagaattgatt |
12956602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 12898211 - 12898170
Alignment:
| Q |
129 |
aagattatgtaaattccctagaattggaacttgtccgaccaa |
170 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
12898211 |
aagattttgtaaattccctagacttggaacttgtccaaccaa |
12898170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 12905833 - 12905792
Alignment:
| Q |
129 |
aagattatgtaaattccctagaattggaacttgtccgaccaa |
170 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||| ||||| |
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|
| T |
12905833 |
aagattttgtaaattccctagacttggaacttgtccaaccaa |
12905792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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