View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_low_24 (Length: 395)
Name: NF19973_low_24
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 36841789 - 36841443
Alignment:
| Q |
17 |
acaattaaaggaaacatatttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgtagatttctctttaattatgtg |
116 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841789 |
acaattaaaggaaacgtgtttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgtagatttctctttaattatgtg |
36841690 |
T |
|
| Q |
117 |
atttgtatccttcaaaagttggtgatagagcaaatataaatagaaatgttcataccatcaaatcagtaaaatcagaagttttcacaatatagnnnnnnng |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36841689 |
atttgtatccttcaaaagttggtga-ggagcaaatataaatagaaatgttcataccatcaaatcagtaaaatcagaagttttcacaatatag-ttttttg |
36841592 |
T |
|
| Q |
217 |
taaagatcaattgcaccaactattatcaattcgaaatactgaatttcttcatgtgaacatgatgtctgctacttagtaaagttttgtttttccataatta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841591 |
taaagatcaattgcaccaactattatcaattcgaaatactgaatttctttatgtgaacatgatgtctgctacttagtaaagttttgtttttccataatta |
36841492 |
T |
|
| Q |
317 |
caataattcgggtttctttgaggaagaaggcagaaattgatgtaatacg |
365 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36841491 |
caataatttgggtttctttgaggaagaaggcaaaaattgatgtaatacg |
36841443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 18929721 - 18929650
Alignment:
| Q |
24 |
aaggaaacatatttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgt |
95 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
18929721 |
aaggaaacgtatttctgtaaagcacacaattttgatttggaattgaaagttatattggttgttgatctttgt |
18929650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University