View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_28 (Length: 380)
Name: NF19973_low_28
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32562013 - 32562191
Alignment:
| Q |
1 |
ttttgagtcatcgtcattttcttcaagtatttcttgggtggttttcttcaattgtgtataatagattttgtttatatttcttactcttcacacatgtctt |
100 |
Q |
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| T |
32562013 |
ttttgagtcatcttcattttctgcaagcatttcttgggtggttttcttcaattgtgtataatagtttttgtctatatttcttactcttcacacatgtctt |
32562112 |
T |
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| Q |
101 |
aatc----tttcnnnnnnnggccgaatatgggctcaacttactttactattgtttaaattggcctgatgttgtcacttg |
175 |
Q |
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| T |
32562113 |
aatcttttttttttttttttgccgaatatgggctcaacttactttaatattgtttaaattggcctgatgttgtcacttg |
32562191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 32562374 - 32562483
Alignment:
| Q |
271 |
tatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatttaacgcttaaa |
370 |
Q |
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| T |
32562374 |
tatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatataacacttaaa |
32562473 |
T |
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| Q |
371 |
taatatcttt |
380 |
Q |
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| T |
32562474 |
taatatcttt |
32562483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 380
Target Start/End: Complemental strand, 53690999 - 53690884
Alignment:
| Q |
264 |
atgtaagtatatgtctttgatccaaatattagaatcaattagattcaaatttaatgaatttgaattgaatttttcttatatagttgaaaatacatttaac |
363 |
Q |
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| T |
53690999 |
atgtaagcataggtctttgatccaaatattagcatcaattctattcaaatttattgaatttgtattacaaattt-ttatatagttgaaaatatatgtaac |
53690901 |
T |
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| Q |
364 |
gcttaaataatatcttt |
380 |
Q |
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| T |
53690900 |
acttaaataatatcttt |
53690884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 29317223 - 29317282
Alignment:
| Q |
47 |
ttcaattgtgtataatagattttgtttatatttcttactcttcacacatgtcttaatctt |
106 |
Q |
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| T |
29317223 |
ttcaattatgtatgatagtttttgtttctcttttttactcttcacacatgtcttaatctt |
29317282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29316935 - 29317023
Alignment:
| Q |
18 |
tttcttcaagtatttcttgggtggttttcttcaattgtgtataatagattttgtttatatttcttactcttcacacatgtcttaatctt |
106 |
Q |
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| T |
29316935 |
tttctccaagcaattcttggatgatgttcttcaattacgtatgatagtttttgtttctttttcttacttttcacacatgtcttgatctt |
29317023 |
T |
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