View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19973_low_3 (Length: 731)
Name: NF19973_low_3
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 674; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 14 - 715
Target Start/End: Original strand, 54903732 - 54904433
Alignment:
| Q |
14 |
agaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54903732 |
agaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatct |
54903831 |
T |
|
| Q |
114 |
tgacattgcattgtttcctccaaaggaacagcaaccatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54903832 |
tgacattgcattgtttcctccaaaggaacagcaacaatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgat |
54903931 |
T |
|
| Q |
214 |
cattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttgtcacagcagcaccttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54903932 |
cattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttttcacagcagcaccttc |
54904031 |
T |
|
| Q |
314 |
aacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcattattgacagtggctccg |
413 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54904032 |
aacatgagagtgattgataaatgctcctgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcattattgacagtggctccg |
54904131 |
T |
|
| Q |
414 |
atgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatcaggcagataaatattctgctgaaactggttga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54904132 |
atgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatcaggcagataaatattctgctgaaactggttga |
54904231 |
T |
|
| Q |
514 |
tgtccattgacgtttgaatgccatgtacggaactcgaactttcactttcagaaaacattggtgtctcaaaattgggaatgttatgagactgaagtggagg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54904232 |
tgtccattgacgtttgaatgccatgtacagaactcgaactttcactttcagaaaacattggtgtctcgaaattgggaatgttatgagactgaagtggagg |
54904331 |
T |
|
| Q |
614 |
gactagtgcagaagaactcattccttccaagttcaaactggatggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtgtgctgctt |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54904332 |
gactagtgcagaagaactcattccttccaagttcaaactggacggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtatgctgctt |
54904431 |
T |
|
| Q |
714 |
ag |
715 |
Q |
| |
|
|| |
|
|
| T |
54904432 |
ag |
54904433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 28 - 714
Target Start/End: Original strand, 54887603 - 54888310
Alignment:
| Q |
28 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || || ||||| |||| ||| ||| |||| |||||||||| ||||||||||||||||| || |
|
|
| T |
54887603 |
aatccaaggtattgttgaaggaagaacccacattttgctgatgcgtgtaacatgaagccgttacaacactcccaagtaatccatcttgacattgcatcgt |
54887702 |
T |
|
| Q |
128 |
ttcctccaaaggaacagcaaccatgtctgtcgaagaaaaat---------------------gagaactgggagaagcaaacttaaagttattgtgcaac |
206 |
Q |
| |
|
|||||| ||||||||| ||| | | | |||||||||||| |||||||| | || |||||||| ||| ||||||| | |
|
|
| T |
54887703 |
ttcctctaaaggaacatcaatgacgcgtatcgaagaaaaatcatctggatttttcttaaattgagaactgagtgaggcaaactttaagctattgtgagat |
54887802 |
T |
|
| Q |
207 |
atttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttgtcacagcag |
306 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||| | ||||||||||||| | | || ||||| |
|
|
| T |
54887803 |
atttgatcattattaaaatcctcactcaatggagaaggattggaagcaaagttataggaaccacttgtagcagggttaaaagatttttgttccatagcag |
54887902 |
T |
|
| Q |
307 |
caccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcattattgacagt |
406 |
Q |
| |
|
|||| ||||| | |||||| || |||||| ||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||| | |
|
|
| T |
54887903 |
gacctccaacagatgggtgatttatgaatgctcttgaattatgtgtttgtaggtgattgcttgagatgcaagaaagaaaactatttgcattattaacatt |
54888002 |
T |
|
| Q |
407 |
ggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggacttaaattaatgttatcaggcagataaatattctgctgaaac |
506 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||| || |||||| |||| | ||||| ||||||||||| |
|
|
| T |
54888003 |
agctctgatgtcttggaagccagaagaatctgtaaatgcacttgaatcatcaattggacttaatttcatgttaccaggtgggtaaatgttctgctgaaat |
54888102 |
T |
|
| Q |
507 |
tggttgatgtccattgacgtttgaatgccatgtacggaactcgaactttcactttcagaaaacattggtgtctcaaaattgggaatgttatgagactgaa |
606 |
Q |
| |
|
||||| || |||| ||||||| ||| || | || | |||||| ||||||||| || |||||| ||| || || |||||||||| |||||||||| |
|
|
| T |
54888103 |
tggttaatttccactgacgttcgaacaccctttaaagcactcgagctttcacttgcaaaaaacaatggctgcttgtaactgggaatgttttgagactgaa |
54888202 |
T |
|
| Q |
607 |
gtggagggactagtgcagaagaactcattccttccaagttcaaactggatggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtgt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| | | |||||||||| ||||| ||| |
|
|
| T |
54888203 |
gtggagggactagtgcagaagaactcattcctctcaagttcaagccagatggtgcgttcaaccgacaaaacatgttactagatgcatatgttggcaatgt |
54888302 |
T |
|
| Q |
707 |
gctgctta |
714 |
Q |
| |
|
|||||||| |
|
|
| T |
54888303 |
gctgctta |
54888310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 168 - 714
Target Start/End: Original strand, 54893388 - 54893934
Alignment:
| Q |
168 |
tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaac |
267 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
54893388 |
tgagaactgggagaggcaaaatttaagctattgccagaaatttgatcattgttaaaatcctcactcaatggagaaggattggaagcaaagttagatgaac |
54893487 |
T |
|
| Q |
268 |
cacttgtgacggggttaaaagattgtgttgtcacagcagcaccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgct |
367 |
Q |
| |
|
|| ||| | || |||||||||| || | ||| ||| ||| ||||| ||||||||| | ||||||| |||| ||||||||| || || |||||| |
|
|
| T |
54893488 |
catatgtagcaggattaaaagattttggttccacgtaagcccctccaacagaagagtgatttacaaatgctcctgaattatgtgttgataggttattgct |
54893587 |
T |
|
| Q |
368 |
tgagatgcaagaaagagaaacatttgcattattgacagtggctccgatgtcttggaagctagaggaatctgtaactgcatttgaatcatcaattggactt |
467 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||| ||| ||| |||||| ||| ||| || |||||||||| || |
|
|
| T |
54893588 |
tgagatgcaagaaagagaactatttgcattattaacagtatctctgatgtcttggaagccagaagaaactgtaaaagcacttgtataatcaattggattt |
54893687 |
T |
|
| Q |
468 |
aaattaatgttatcaggcagataaatattctgctgaaactggttgatgtccattgacgtttgaatgccatgtacggaactcgaactttcactttcagaaa |
567 |
Q |
| |
|
||||| ||||| || || ||||||| ||| ||||||||||||| || ||| || ||| ||| || || ||||| | ||||||||| |||||| |
|
|
| T |
54893688 |
aaattcttgttaccaagcggataaatgttccgctgaaactggttaatttccgccgatgttcgaacaccctgggaaaaactcaagctttcacttgcagaaa |
54893787 |
T |
|
| Q |
568 |
acattggtgtctcaaaattgggaatgttatgagactgaagtggagggactagtgcagaagaactcattccttccaagttcaaactggatggtgcgttcag |
667 |
Q |
| |
|
|||| || || ||| || ||||||| |||||||||||||| |||||| ||||||||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
54893788 |
acatcggctgcttgaaactgagaatgttttgagactgaagtggtgggactggtgcagaaggactcattcgtctaaagttcaaactagatggtgcgttcag |
54893887 |
T |
|
| Q |
668 |
ccgacaaaacatgtcattggatgcatatgctggcagtgtgctgctta |
714 |
Q |
| |
|
||||||||||||| || | |||||||||| |||||||||||| |||| |
|
|
| T |
54893888 |
ccgacaaaacatgccactagatgcatatgttggcagtgtgctactta |
54893934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 54893218 - 54893352
Alignment:
| Q |
16 |
aagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttg---tgtgtaccatggagcatttataacattcccaagtaagccatc |
112 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| || ||||||| || || ||||| |||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
54893218 |
aagaagcaagagagtccaaggtattgttgaaggaagagctgacattttgctgctgcgtcgtgtaacatgaagcctttacaacattcccaagtaagccatc |
54893317 |
T |
|
| Q |
113 |
ttgacattgcattgtttcctccaaaggaacagcaa |
147 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||| |
|
|
| T |
54893318 |
ttgacattgcatcgcttcctccgaaggaacagcaa |
54893352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 11186503 - 11186426
Alignment:
| Q |
320 |
agagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttgcatt |
397 |
Q |
| |
|
||||||||||||||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11186503 |
agagtgattgataaatgctgctgaattttatgttagtagttgattgcttgagatgcaagaaagagaacaatttgcatt |
11186426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University