View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_30 (Length: 355)
Name: NF19973_low_30
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_30 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0260 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 22247272 - 22247594
Alignment:
| Q |
12 |
attctccatatttctgtgtattttctgtcagtttgtttctgtttgttttggtgtggcagggaatcagtttatgaatccttgatagttttacttgttagtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22247272 |
attctccatatttctgtgtattttctgtcagtttgtttctgtttgttttggtgtggcagggaatcagtttatgaatccttgatagttttacctgctagtt |
22247371 |
T |
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| Q |
112 |
gcagtgtttgtaannnnnnngctatcttaaaaaattgtgtttctaccttatatctaattgttattagtgtgcttacttgattttaagaaatggatcctag |
211 |
Q |
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| T |
22247372 |
gcagtgtttgtaatttttttgctatcttaaaaaattgtgtttctaccttatatctaattgttattagtgtgcttacttgattttaagaaatggatcctag |
22247471 |
T |
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| Q |
212 |
tttagtcagtgcaagaagtttgggccacaagacaaaatggaaaaagaaagagggatgaaagcaacactgtggaaaagaaagaggatgtaagaggttactt |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22247472 |
tttagtcagtgcaagaagtttgggccacaagac-aaagggaaaaagaaata-ggatgaaagcaacactgtggaaaagaaagaggatgtaagaggttactt |
22247569 |
T |
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| Q |
312 |
cacatggaatttggaaatggagcgt |
336 |
Q |
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| T |
22247570 |
cacatggaatttggaaatggagcgt |
22247594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 336
Target Start/End: Original strand, 41315898 - 41316073
Alignment:
| Q |
161 |
atatctaattgttatta-gtgtgcttacttgattttaagaaatggatcctagtttagtcagtgcaagaagtttgggccacaagacaaaatggaaaaagaa |
259 |
Q |
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| T |
41315898 |
atatctgattattattatgtgtgcttacttgatttcaagaaatgaattctagtctagtctatgcaagaggtttgggccgcaagac-aaagggaaaaagaa |
41315996 |
T |
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| Q |
260 |
agagggatgaaagcaacactgtggaaaagaaagaggatgtaagaggttacttcacatggaatttggaaatggagcgt |
336 |
Q |
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| T |
41315997 |
agatggaagaaagcaatatttgggttaagaaagaggatgcaagagcttacttcacgtggaatttggacatggagcgt |
41316073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 336
Target Start/End: Original strand, 44611692 - 44611988
Alignment:
| Q |
45 |
tgtttctgtttgttttggtgtggcagggaatcagtttatgaatccttgatagttttacttgttagttgcagtgtttgtaannnnnnngctatcttaaaaa |
144 |
Q |
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|||||||||||||||||||||||||||||||| || | |||||||||||||||||||| || |||||||||| ||||||| | |||| |||||| |
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| T |
44611692 |
tgtttctgtttgttttggtgtggcagggaatcggtctgtgaatccttgatagttttacctgctagttgcagtttttgtaattcttttgttatcataaaaa |
44611791 |
T |
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| Q |
145 |
attgtgtttctaccttat----atctaattgttattagtgtgct--tacttgattttaagaaatggatcctagtttagtcagtgcaagaagtttgggcca |
238 |
Q |
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||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
44611792 |
attatgtttctaccttattgaaatctaattgttattagtgtgtggatacttgatttcaagaaatggattctagtttagtcaatgcaagaattttgggcca |
44611891 |
T |
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| Q |
239 |
caagacaaaatggaaaaagaaagagggatgaaagcaacactgtggaaaagaaagaggatgtaagaggttacttcacatggaatttggaaatggagcgt |
336 |
Q |
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||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
44611892 |
caagacaaag-gtaaaaagaaagagggaggaaagtaacactgtggaaaagaaagaggatgtacgaggttacttcacgtggaatttggaaatggagcgt |
44611988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 10158 - 10096
Alignment:
| Q |
274 |
aacactgtggaaaagaaagaggatgtaagaggttacttcacatggaatttggaaatggagcgt |
336 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
10158 |
aacactgtggaaaagaaagaggatgtacgaggttacttcacgtggaatttggaaatggagcgt |
10096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0260 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0260
Description:
Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 17280 - 17312
Alignment:
| Q |
12 |
attctccatatttctgtgtattttctgtcagtt |
44 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17280 |
attctccatatttctgtgtattttctgtcagtt |
17312 |
T |
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