View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_32 (Length: 351)
Name: NF19973_low_32
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 32317048 - 32316720
Alignment:
| Q |
9 |
atgaatataataattgtgattaccttatgttatcaacattgaccatgatttcaacccactcctctttgacaacaactttgtaattgaactgaagaacact |
108 |
Q |
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| T |
32317048 |
atgaatataataattgtgattaccttatgttatcaacattgaccatgatttcaacccactcctctttgacaacaactttgtaattgaactgaagaacact |
32316949 |
T |
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| Q |
109 |
ttcaacttggtgatacttgagagaaaattccagtttctcatgtagatgactttccgatttttctacatccatgcatgtagcaggacaataaagttgcact |
208 |
Q |
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| T |
32316948 |
ttcaacttggtgatacttgagagaaaattccagtttgtcatgtggatgactttccgatttctctacatccatgcatgtagcaggacaataaagttgcact |
32316849 |
T |
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| Q |
209 |
ttccacaacccacttgttgaaaatgcataagaaaacaaagaacatggcgttctaaacatgttttgatgctgttcttcaatctcaccaacccaattagtaa |
308 |
Q |
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| T |
32316848 |
ttccacaacccacttgttgaaaatgcataagaaaacaaagaacatggcgttctaaacatgttttgatgctgttcttcaatctcaccaacccaattagtaa |
32316749 |
T |
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| Q |
309 |
ttgcaaggttcacagaacgcatccattgt |
337 |
Q |
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| T |
32316748 |
ttgcaaggttcacagaacgcatccattgt |
32316720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 36041892 - 36041782
Alignment:
| Q |
27 |
attaccttatgttatcaacattgaccatgatttcaacccactcctctttgacaacaactttgtaattgaactgaagaacactttcaacttggtgatactt |
126 |
Q |
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| T |
36041892 |
attaccttatgttgtcaatgttcaccatgatttcgacccacttctctttgataaaggctttgtggttgaattgaagaacaccttcaagttgttgatattt |
36041793 |
T |
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| Q |
127 |
gagagaaaatt |
137 |
Q |
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|||||| |||| |
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| T |
36041792 |
gagagagaatt |
36041782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 36041710 - 36041648
Alignment:
| Q |
206 |
actttccacaacccacttgttgaaaatgcataagaaaacaaagaacatggcgttctaaacatg |
268 |
Q |
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||||||||||||||| |||||||||||||| |||||| |||| | |||| |||||||||||| |
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| T |
36041710 |
actttccacaacccaaatgttgaaaatgcatgagaaaataaaggagatggtgttctaaacatg |
36041648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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