View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_40 (Length: 302)
Name: NF19973_low_40
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 54936167 - 54935946
Alignment:
| Q |
18 |
gcttttacggaggtttcacgtgggaaaagtatattgtgcacccattcttaaaatttgggttattatgcttaattcaattcttaccagtttttgtaatatg |
117 |
Q |
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| T |
54936167 |
gcttttacggaggtttcacgtgggaaaagtatattgtgcacccattcttaaaatttgggttattatgcttaattcaattcttaccag--tttgtaatatg |
54936070 |
T |
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| Q |
118 |
atgattgttcatcacttgtaaaaacatttcta---------acatttaatttgagatttttaacacgctaacatttaccgattgtagcaaagtagagatg |
208 |
Q |
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| T |
54936069 |
atgattgttcatcacttgtaaaaacatttctataccacatctcatttaatttgagatttttaacacgctaacatttaccgagtgcagcaaagtagagatg |
54935970 |
T |
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| Q |
209 |
atcatagagtagatgctctaacga |
232 |
Q |
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| T |
54935969 |
atcatagagtagatgctctaacga |
54935946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 54935909 - 54935852
Alignment:
| Q |
235 |
atcataaagtcaaataaaagaaaattaaaattgagggatcgaacttatttatcctttg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54935909 |
atcataaagtcaaataaaagaaaattaaaattgagggatcgaacttatttatcctttg |
54935852 |
T |
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