View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_43 (Length: 277)
Name: NF19973_low_43
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_43 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 10906 - 10660
Alignment:
| Q |
8 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
107 |
Q |
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| T |
10906 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
10807 |
T |
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| Q |
108 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccactt-cccctcaatccc |
206 |
Q |
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| T |
10806 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatccc |
10707 |
T |
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| Q |
207 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgca |
253 |
Q |
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| T |
10706 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgca |
10660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 6924 - 6677
Alignment:
| Q |
8 |
tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc |
107 |
Q |
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| T |
6924 |
tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatc |
6825 |
T |
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| Q |
108 |
tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcc-cctcaatccc |
206 |
Q |
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| T |
6824 |
tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg |
6725 |
T |
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| Q |
207 |
ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcac |
254 |
Q |
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| T |
6724 |
tcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcac |
6677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 48912763 - 48912512
Alignment:
| Q |
3 |
tcgagtgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccat |
102 |
Q |
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| T |
48912763 |
tcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat |
48912664 |
T |
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| Q |
103 |
caatctcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcc-cctca |
201 |
Q |
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| T |
48912663 |
caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca |
48912564 |
T |
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| Q |
202 |
atcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgca |
253 |
Q |
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| T |
48912563 |
atcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgca |
48912512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 48958120 - 48958157
Alignment:
| Q |
217 |
gttatcaacttctcattgtaaaattgttctccatgcac |
254 |
Q |
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| T |
48958120 |
gttatcaacttctcattgtagaattgttctccatgcac |
48958157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 48965126 - 48965339
Alignment:
| Q |
39 |
tagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctccc |
138 |
Q |
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| T |
48965126 |
tagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactact |
48965225 |
T |
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| Q |
139 |
gaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccct-caatcccccgcacttgcgttatcaacttctcattgtaa |
237 |
Q |
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| T |
48965226 |
caccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtag |
48965325 |
T |
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| Q |
238 |
aattgttctccatg |
251 |
Q |
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| T |
48965326 |
aattgttctccatg |
48965339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 48974077 - 48974134
Alignment:
| Q |
200 |
caatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcactgg |
257 |
Q |
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| T |
48974077 |
caataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactgg |
48974134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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