View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_47 (Length: 272)
Name: NF19973_low_47
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 4028524 - 4028328
Alignment:
| Q |
13 |
aaaatgcaccaaactgttgttaaccaaatcaagtgagagactttccgacccttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatct |
112 |
Q |
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| T |
4028524 |
aaaatgcaccaaactgttgttaaccaaattaagtgagagactttccgacccttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatct |
4028425 |
T |
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| Q |
113 |
cgtagctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttggaagaaaaaggtcaaggttagtt |
209 |
Q |
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| T |
4028424 |
cgtagctccaaccatttgaaaattagatcccaacaattcctcttaatgaagagagttaaattatgagacatttggaagaaaaaggtcaaggttagtt |
4028328 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 26619007 - 26619056
Alignment:
| Q |
64 |
ttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctc |
113 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
26619007 |
ttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctc |
26619056 |
T |
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