View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_5 (Length: 656)
Name: NF19973_low_5
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_5 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Complemental strand, 37216550 - 37215954
Alignment:
| Q |
18 |
tgcaagatcccaatgttggaagtgcatgtattgttttttcttctgttgtgcaaaggagacttaatggggttcagtaacgatgaaaggtagtcaaggagag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216550 |
tgcaagatcccaatgttggaagtgtgtgtattgttttttcttctgctgtgcaaaggagacttaatggggttcagtaacgatgaaaggtagtcaaggagag |
37216451 |
T |
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| Q |
118 |
tccagtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaattccattcaatggtctacggaaaataatgcgactctcgagtaaggatataa |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216450 |
tccggtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaactccactcaatggtctacggaaaataatgcgactctcgagtaaggatataa |
37216351 |
T |
|
| Q |
218 |
aagttatgtttaaaacattaaagagaagtagagggaaaatgttgaaagtcgtttatgattcatctaaggctgaaggtaacaggggttcaattatcttcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37216350 |
aagttatgtttaaaacattaaagagaagtagagggaacatgttgaaagtcgtttatgattcacctaaggctgaaggtaacaggggttcaattatcttcta |
37216251 |
T |
|
| Q |
318 |
gtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtgataaacatgaagtcacaatggatgaatgcatgaaggattgataagt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
37216250 |
gtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtgataaacatgaagtcacaatagatg-atgcatgaaggattgataagt |
37216152 |
T |
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| Q |
418 |
ctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctgagatgaagggtggagaaagaggtgggattacatgttataaagggag |
517 |
Q |
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| T |
37216151 |
ctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctaagatgaagggtggagaaagaggggggattacatgttataaagggag |
37216052 |
T |
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| Q |
518 |
tccgcgtgtggtaaggaaggtgttaatgttgtcaaaggggttgtagagagggaagtgaggacatgtgagtagtggtggttgttagtgtgaagggtggt |
615 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37216051 |
tccgcgtgtggtaaggaaggtgttaattttgtcaaaggggttgtagagagggaagtgagggcatgtgagtagtggtggttgttagtgtgaagggtggt |
37215954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 644
Target Start/End: Complemental strand, 19713506 - 19713474
Alignment:
| Q |
612 |
tggtatcagagcaataatcctcggacaaatatt |
644 |
Q |
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| T |
19713506 |
tggtatcagagcaataatcctcggaaaaatatt |
19713474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 8572 - 8535
Alignment:
| Q |
612 |
tggtatcagagcaataatcctcggacaaatattcttgg |
649 |
Q |
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| T |
8572 |
tggtatcagagcaataatcctcggactaatatttttgg |
8535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 641
Target Start/End: Original strand, 7646713 - 7646742
Alignment:
| Q |
612 |
tggtatcagagcaataatcctcggacaaat |
641 |
Q |
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| T |
7646713 |
tggtatcagagcaataatcctcggacaaat |
7646742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 19814737 - 19814700
Alignment:
| Q |
612 |
tggtatcagagcaataatcctcggacaaatattcttgg |
649 |
Q |
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| T |
19814737 |
tggtatcagagcaataatcctcggactaatatttttgg |
19814700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 640
Target Start/End: Complemental strand, 25043964 - 25043936
Alignment:
| Q |
612 |
tggtatcagagcaataatcctcggacaaa |
640 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25043964 |
tggtatcagagcaataatcctcggacaaa |
25043936 |
T |
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