View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_57 (Length: 239)
Name: NF19973_low_57
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_57 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 6846260 - 6846036
Alignment:
| Q |
18 |
ttaatggtaacatttttgtgaagaatggagaagaaaagaagttgaacatcttttataaagttacctttcnnnnnnnnnnn---gttttttaaagtttgtt |
114 |
Q |
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| T |
6846260 |
ttaatggtaacatttttgtgaagaatggagaagaaaagaagttgaacatcttttataaagttacctttcaaaaaaaaaaaaaagttttataaagtttgtt |
6846161 |
T |
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| Q |
115 |
agtcatagaggaaacatccactatatatctagagttagtgcgcggttgcattattcaaatagcttcaatcatgaactggaaatttgtttcgtttttgata |
214 |
Q |
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| T |
6846160 |
agtcatagaggaaacatccactatatatctagagttagtgcgcggttgcattattcaaatagcttcaatcatgaactggaaatttgtttcgtttttgata |
6846061 |
T |
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| Q |
215 |
cgataacccgatctcaatgataatt |
239 |
Q |
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| T |
6846060 |
cgataacccgatctcaatgataatt |
6846036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 6839119 - 6839080
Alignment:
| Q |
181 |
aatcatgaactggaaatttgtttcgtttttgatacgataa |
220 |
Q |
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| T |
6839119 |
aatcatgaactggaaatttgtttcgtttttgatacgataa |
6839080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 6648976 - 6648925
Alignment:
| Q |
169 |
tcaaatagcttcaatcatgaactggaaatttgtttcgtttttgatacgataa |
220 |
Q |
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| T |
6648976 |
tcaaagaggttcaatcatgaagtgcaaatttgtttcatttttgatacgataa |
6648925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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