View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19973_low_58 (Length: 238)

Name: NF19973_low_58
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19973_low_58
NF19973_low_58
[»] chr8 (10 HSPs)
chr8 (14-234)||(9932249-9932469)
chr8 (52-234)||(25582734-25582916)
chr8 (15-234)||(13780997-13781215)
chr8 (42-234)||(13089930-13090122)
chr8 (42-234)||(4034444-4034636)
chr8 (40-234)||(8444403-8444597)
chr8 (52-234)||(45540090-45540272)
chr8 (40-226)||(24503817-24504003)
chr8 (121-226)||(33574260-33574365)
chr8 (176-227)||(10230265-10230316)
[»] chr1 (14 HSPs)
chr1 (14-234)||(20505372-20505592)
chr1 (14-234)||(26676626-26676846)
chr1 (14-234)||(33676649-33676869)
chr1 (18-230)||(46731800-46732012)
chr1 (62-234)||(28756631-28756803)
chr1 (42-234)||(34549116-34549308)
chr1 (35-234)||(31911701-31911900)
chr1 (52-225)||(19228051-19228224)
chr1 (52-234)||(33936202-33936384)
chr1 (42-231)||(27007543-27007732)
chr1 (52-234)||(4532230-4532412)
chr1 (133-230)||(52022615-52022712)
chr1 (118-234)||(51534621-51534737)
chr1 (35-226)||(15759709-15759900)
[»] chr3 (5 HSPs)
chr3 (14-234)||(10436584-10436804)
chr3 (14-234)||(20406106-20406326)
chr3 (17-231)||(15029811-15030025)
chr3 (54-232)||(53459062-53459240)
chr3 (121-226)||(20692239-20692344)
[»] chr5 (7 HSPs)
chr5 (14-234)||(26369088-26369308)
chr5 (40-234)||(19021153-19021347)
chr5 (35-231)||(22580547-22580746)
chr5 (40-234)||(22639322-22639516)
chr5 (18-201)||(40973457-40973640)
chr5 (35-226)||(25982339-25982530)
chr5 (179-230)||(6536979-6537030)
[»] chr4 (15 HSPs)
chr4 (17-234)||(40850544-40850761)
chr4 (14-234)||(47590608-47590828)
chr4 (17-232)||(56024775-56024990)
chr4 (14-231)||(48640461-48640678)
chr4 (42-230)||(37870805-37870993)
chr4 (40-234)||(9896649-9896843)
chr4 (40-234)||(43499060-43499254)
chr4 (40-234)||(36651884-36652078)
chr4 (40-234)||(42718333-42718527)
chr4 (40-226)||(7743335-7743521)
chr4 (52-227)||(39059871-39060046)
chr4 (60-147)||(23106851-23106938)
chr4 (18-226)||(40345944-40346152)
chr4 (18-190)||(50771540-50771712)
chr4 (54-226)||(30598391-30598563)
[»] chr7 (16 HSPs)
chr7 (14-234)||(40858173-40858393)
chr7 (42-230)||(40871461-40871649)
chr7 (42-234)||(17194035-17194226)
chr7 (52-202)||(9942777-9942927)
chr7 (96-230)||(12623063-12623197)
chr7 (40-234)||(1031987-1032181)
chr7 (124-201)||(8123965-8124042)
chr7 (18-226)||(32575204-32575412)
chr7 (45-226)||(19323986-19324167)
chr7 (18-225)||(18299607-18299814)
chr7 (18-226)||(38141974-38142182)
chr7 (35-226)||(15669443-15669634)
chr7 (59-226)||(29126016-29126183)
chr7 (18-226)||(29626648-29626856)
chr7 (121-193)||(41767942-41768014)
chr7 (150-232)||(15674137-15674219)
[»] chr6 (7 HSPs)
chr6 (14-234)||(6029057-6029277)
chr6 (40-234)||(24393667-24393861)
chr6 (42-234)||(12912403-12912595)
chr6 (40-234)||(18972763-18972958)
chr6 (18-226)||(7093657-7093865)
chr6 (121-232)||(8753071-8753182)
chr6 (45-105)||(32737327-32737387)
[»] chr2 (12 HSPs)
chr2 (35-230)||(2380778-2380973)
chr2 (42-234)||(11031543-11031735)
chr2 (113-230)||(3044166-3044283)
chr2 (36-231)||(7901120-7901309)
chr2 (40-229)||(6764183-6764372)
chr2 (40-234)||(12410550-12410744)
chr2 (40-234)||(12422610-12422804)
chr2 (40-234)||(37647728-37647922)
chr2 (14-137)||(29739840-29739963)
chr2 (126-230)||(34394638-34394742)
chr2 (55-234)||(27271426-27271596)
chr2 (174-234)||(29739964-29740024)
[»] scaffold0041 (1 HSPs)
scaffold0041 (42-230)||(94633-94821)
[»] scaffold0074 (1 HSPs)
scaffold0074 (40-231)||(23550-23742)
[»] scaffold0300 (1 HSPs)
scaffold0300 (40-234)||(9340-9534)
[»] scaffold0432 (1 HSPs)
scaffold0432 (18-226)||(8835-9043)
[»] scaffold0020 (1 HSPs)
scaffold0020 (180-234)||(124343-124397)
[»] scaffold0037 (1 HSPs)
scaffold0037 (173-234)||(861-922)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 9932469 - 9932249
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9932469 ctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 9932370  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9932369 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaa 9932270  T
Q  214 atcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||    
T  9932269 atcctttaccttgcttgggaa 9932249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 25582916 - 25582734
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25582916 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 25582817  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25582816 ttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaa 25582734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 13781215 - 13780997
Alignment:
Q  15 tcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagctt 114  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||    
T  13781215 tcaaaaaacaaccgctccgcttttcatcttatatggttatcttgtgtgtggatgatttggcttgaaaggaatgctcgggtttttcaccaaatagaagctt 13781116  T
Q  115 cgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaa 214  Q
    |||||| | ||||| || |||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  13781115 cgattacttaattgttaaataaagttaagcttcaatcttact-gtggctgaaagcaaatcgtcctaattttgttttctcctaccattcttggtggttaaa 13781017  T
Q  215 tcctttaccttgcttgggaa 234  Q
    ||||||||||| ||||||||    
T  13781016 tcctttaccttacttgggaa 13780997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 13090122 - 13089930
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| ||||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  13090122 cttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 13090023  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||    
T  13090022 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccatttatggtggttgaatcctttaccttgcttgggaa 13089930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 4034636 - 4034444
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| ||||||||||| ||||||||||||||||||| || | | |||||||||| |||||||||  ||||||||||||| |||||||| |    
T  4034636 cttatttggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcagatctttcaccaaaaagaagcttcttttaatcaattgctggataaagtca 4034537  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||    
T  4034536 agcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttgcttgggaa 4034444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 8444597 - 8444403
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || || |||||||||||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  8444597 atcttatttggctatcttgtgtgtgggtgatctgccttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 8444498  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| |||||||| || | ||| ||  ||||||||||||| ||||    
T  8444497 taagctccaatcatactggtggctgaaagcgaatcgacctagttttgttttctcttaccattcatggttgttgaactctttaccttgcttaggaa 8444403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 45540090 - 45540272
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| || | ||||||||||||||||||    |||||||||| |||||||||  ||||||||||| ||||||||||||| ||||||||    
T  45540090 tatcttgtgtgtgggtgatctagcttgaaaggaatgctcgaacatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaaacttcaatc 45540189  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
     |||||||||| |||||| || || | |||||||||||||||||||||||| || ||||| || |||||||||||||||||||    
T  45540190 atactggtggctgaaagcgaaccgccttagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgggaa 45540272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 24503817 - 24504003
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| ||||| |||||||| |||| |||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  24503817 atcttatttggctatcttgtgtgtgggtgatttgtcttgaaagtaatgttcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 24503916  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    |||||| ||||| |||||||||  |||||| || || |||||||||||||||||||||||||| || ||| | || |||||||||||    
T  24503917 taagctccaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggctgaaccctttaccttg 24504003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 33574365 - 33574260
Alignment:
Q  121 atcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatccttt 220  Q
    ||||||| || || ||| |||| |||||||||| |||||||  |||||| ||||||||||| ||||||||||| || |||| ||  ||||| || || ||    
T  33574365 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcattttttgtggttgaacccatt 33574266  T
Q  221 accttg 226  Q
    ||||||    
T  33574265 accttg 33574260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 10230316 - 10230265
Alignment:
Q  176 tcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgc 227  Q
    |||| |||||||||||||||||||||| || |||||||||| ||||| ||||    
T  10230316 tcctcgttttgttttctcctaccattcatggtggttaaatcatttactttgc 10230265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 20505372 - 20505592
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20505372 ctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 20505471  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20505472 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaa 20505571  T
Q  214 atcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||    
T  20505572 atcctttaccttgcttgggaa 20505592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 26676626 - 26676846
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26676626 ctcaaaaaacaatcgctccgcttttcatctaatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 26676725  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26676726 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaa 26676825  T
Q  214 atcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||    
T  26676826 atcctttaccttgcttgggaa 26676846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 33676869 - 33676649
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |    
T  33676869 ctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgtgtgagtgatttggcttgaaaggaatgctcaggtttttcaccaaacagaagtt 33676770  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  33676769 tcgattaatcaattgctagataaagttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaa 33676670  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||||||||||||| |||||||    
T  33676669 atcctttaccttgtttgggaa 33676649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 46731800 - 46732012
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  46731800 aaaaacaaccgctctgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaataatcgggtttttcaccaaacaaaagcttcga 46731899  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||| |||||||||||||||||||| ||| |||||||||||    
T  46731900 ttaatcaattgctagataaagttaagcttcaatcttgctggtgactgaaagcaaatcgtcctaattttgttttctcctaccatttttggtggttaaatcc 46731999  T
Q  218 tttaccttgcttg 230  Q
    |||||||||||||    
T  46732000 tttaccttgcttg 46732012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 28756803 - 28756631
Alignment:
Q  62 gtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactggtgg 161  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28756803 gtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgttagataaagttaagcttcaatcttactggtgg 28756704  T
Q  162 cagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    | |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  28756703 ctgaaagcaaatcatcctagttttgttttctcctaccattcttggtggttaaatcctttaccttgtttgggaa 28756631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 34549116 - 34549308
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| ||||||||||| || |||||||||||||||| | || | ||| |||||| |||||||||  |||||||||||||||||||||| |    
T  34549116 cttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgataggatctttaaccaaaaagaagcttcttttaatcaattgctagataaagtca 34549215  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  34549216 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttgcttgggaa 34549308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 35 - 234
Target Start/End: Complemental strand, 31911900 - 31911701
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    |||| ||||||| ||| |||||||||| ||||| ||||| |||||||||||||||| | | |||||||||| ||||| |||| |||||||||||||||||    
T  31911900 ttttaatcttatttggctatcttgtgtatgggtgatttgacttgaaaggaatgctcagatctttcaccaaaaagaagtttcgtttaatcaattgctagat 31911801  T
Q  135 aaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||||||| || ||||| | || |||||||||||||||||    
T  31911800 aaagttaagcttcaatcttactagtggctgaaagtgaatcgtcatagttttgttttctcctaccattcgtggtggttgagtcatttaccttgcttgggaa 31911701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 19228224 - 19228051
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||| ||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||  |||||||||||||||||||||| |||||||||||    
T  19228224 tatcatgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatc 19228125  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttacctt 225  Q
    |||  |||||| ||| |  |||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  19228124 ttatcggtggctgaaggtaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttacctt 19228051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 33936202 - 33936384
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| |||||||||||||||||||||||| | ||||||||||  |||| |||| |||||||||||||| |||||||||||||||||||    
T  33936202 tatcttgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaatgaagattcgtttaatcaattgctaaataaagttaagcttcaatc 33936301  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| |  | |||||| ||||||| ||||||||||||||| |||||||| || ||||  |||||||||||||| |||||||    
T  33936302 ttactgataactgaaagcgaatcgtcatagttttgttttctcttaccattcgtggtggtcgaatcctttaccttgattgggaa 33936384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 27007732 - 27007543
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||||||  |||||||||||||||| ||||||||||||| ||||| |||||| |||||||||| |||| ||||| |||||||||||||||||| |||||    
T  27007732 cttatatgactatcttgtgtgtgggtgatttggcttgaaatgaatgttcgggtctttcaccaaaaagaatcttcgtttaatcaattgctagatagagtta 27007633  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgg 231  Q
    |  ||||||| || |||| || |||||| |||  | ||||||||||||||||||||||||| || ||||| |||||||||| || |||||    
T  27007632 aatttcaatcatattggtagctgaaagcgaatttttctagttttgttttctcctaccattcgtggtggttgaatcctttacattacttgg 27007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 4532412 - 4532230
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| || || |||||||||||||||||  | |||||||||| |||| ||||  ||||||||||| |||||||||||||||  |||||    
T  4532412 tatcttgtgtgtgggtgatctgacttgaaaggaatgctcgcatatttcaccaaaaagaaacttcttttaatcaattgttagataaagttaagcaccaatc 4532313  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
     |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || |||| ||||||||| ||||    
T  4532312 atactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaacccttcaccttgcttaggaa 4532230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 52022615 - 52022712
Alignment:
Q  133 ataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    |||||||||||||||||||||||||  ||| |||||| ||| |||||||||||||||||||||| ||||| || ||||| ||||||||||||| ||||    
T  52022615 ataaagttaagcttcaatcttactgacggccgaaagcgaattgtcctagttttgttttctcctatcattcatggtggttgaatcctttaccttacttg 52022712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 51534737 - 51534621
Alignment:
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    ||||||||||| |||||||||||||||| ||||| || ||||||| |||||| || || |||||||||| ||||||||||||||| || || || || ||    
T  51534737 ttaatcaattgttagataaagttaagctccaatcatattggtggctgaaagcgaaccgacctagttttggtttctcctaccattcatggtgattgaaccc 51534638  T
Q  218 tttaccttgcttgggaa 234  Q
    |||||||||||| ||||    
T  51534637 tttaccttgcttaggaa 51534621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 15759709 - 15759900
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    |||| |||| |||||| | |||||||||| ||| |||||| | ||||| ||  ||||||| ||||| |||| ||| |  ||| | |||||||| ||||||    
T  15759709 ttttaatctcatatggctttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactagat 15759808  T
Q  135 aaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    ||| |||| |||||||| |||||||||| |||||| || |||||||  |||| ||| ||||||||||  |||||||| || |||||||||||    
T  15759809 aaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtgatggttgaaccctttaccttg 15759900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 10436804 - 10436584
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10436804 ctcaaaaaacaatcgctctgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 10436705  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10436704 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaa 10436605  T
Q  214 atcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||    
T  10436604 atcctttaccttgcttgggaa 10436584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 20406106 - 20406326
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
T  20406106 ctcaaaaaacaaccgctccgcttttcatcttatatggttatcttgtgtgtgggtgatttgacttgaaaggaatgctcggatttttcaccaaacagaagct 20406205  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  20406206 tcgattaagcaattgctagataaagttaagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaa 20406305  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||| |||||||||||||||||    
T  20406306 atcttttaccttgcttgggaa 20406326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 15029811 - 15030025
Alignment:
Q  17 aaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcg 116  Q
    |||||||||||||| || |||| |||||||| ||||||||| || |||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  15029811 aaaaaacaatcgcttcgcttttaatcttataaggttatcttatgcgtgggtgatttggcttgaaatgaatgcttgggtttttcaccaaacaaaagcttcg 15029910  T
Q  117 attaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatc 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||| || |||||||| ||||||||||||| | || ||||||||||    
T  15029911 attaatcaattgctagataaagttaagcttcaatcttattggtggttgaaagcgaatcatcatagttttggtttctcctaccatacatggtggttaaatc 15030010  T
Q  217 ctttaccttgcttgg 231  Q
     ||||||||||||||    
T  15030011 ttttaccttgcttgg 15030025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 53459240 - 53459062
Alignment:
Q  54 tcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctt 153  Q
    |||||||||||||| |||||| | ||||| ||  ||||||| ||||| |||| ||| || ||| | |||||||| ||||||||| |||| |||||||| |    
T  53459240 tcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaacttcaatcat 53459141  T
Q  154 actggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttggg 232  Q
    ||||||||| |||||| || ||| |||  |||  ||| ||||||||||  || ||||| || ||||||| ||| |||||    
T  53459140 actggtggctgaaagcgaaccgttctacctttactttttcctaccattggtggtggttgaaccctttacattgtttggg 53459062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 20692344 - 20692239
Alignment:
Q  121 atcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatccttt 220  Q
    ||||||| || || ||| |||| ||||||||||||||||||| |||| | ||||||||||   |||||||||| || |||| ||| |||| |||||| ||    
T  20692344 atcaattactcgacaaaattaaccttcaatcttactggtggctgaaaacgaatcgtcctaaccttgttttctcttatcatttttggtggtcaaatccatt 20692245  T
Q  221 accttg 226  Q
    ||||||    
T  20692244 accttg 20692239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 26369308 - 26369088
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26369308 ctcaaaaaacaatcgctccacttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 26369209  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  26369208 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctactattcttggtggttaa 26369109  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||| |||||||||||||||||    
T  26369108 atcttttaccttgcttgggaa 26369088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 19021153 - 19021347
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  19021153 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 19021252  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || ||||||||||||||||||| |||||| || ||||| || |||||||||||||| ||||    
T  19021253 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctgccattcatggtggttgaaccctttaccttgcttaggaa 19021347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 22580746 - 22580547
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    |||| ||||||||||| ||||||||||| |||| ||||||||||||||||||| |||||| ||||| |||| | || ||||| |||||||||||||||||    
T  22580746 ttttaatcttatatggctatcttgtgtgcgggtgatttggcttgaaaggaatgttcgggtctttcaacaaatataaacttcgtttaatcaattgctagat 22580647  T
Q  135 aaagttaagcttcaatcttactgg---tggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgg 231  Q
    ||||| ||||||||||||||||||   |||| |||||| ||| |||||||||||  ||| ||||||||||| || ||||| |||| ||||||||||||||    
T  22580646 aaagtgaagcttcaatcttactggtgctggctgaaagcgaatagtcctagttttactttttcctaccattcgtggtggttgaatcatttaccttgcttgg 22580547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 22639322 - 22639516
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||||||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  22639322 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 22639421  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| || ||||||| |||||  || || |||||||||||||||||||||||||| || ||||| || | |||||||||||| ||||    
T  22639422 taagctccaatcatattggtggctgaaagtgaaccgacctagttttgttttctcctaccattcatggtggttgaaccatttaccttgcttaggaa 22639516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 40973640 - 40973457
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| || |||||||| ||||| |||| ||| || |||     
T  40973640 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgt 40973541  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccatt 201  Q
    |  ||||||| ||||||||| |||| |||||||| |||||||||| |||||| || ||||||||||||  ||| ||||||||||    
T  40973540 tccatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctagttttactttttcctaccatt 40973457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 25982530 - 25982339
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    |||| |||| |||||| | |||| ||||||||| |||||| | ||||| || || || || ||||| |||| ||| |  ||| |  ||||||| ||||||    
T  25982530 ttttaatctcatatggctttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttccatcaattactagat 25982431  T
Q  135 aaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    ||| |||| |||||||| |||||||||| |||||| || ||||| || |||||||| ||||||||||  || ||||| || |||||||||||    
T  25982430 aaaattaaacttcaatcatactggtggctgaaagcgaaccgtccaagctttgttttttcctaccatttgtggtggttgaaccctttaccttg 25982339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 6536979 - 6537030
Alignment:
Q  179 tagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    |||||||||||||||||||||||| || ||||| || |||||||||||||||    
T  6536979 tagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttg 6537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 40850544 - 40850761
Alignment:
Q  17 aaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcg 116  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  40850544 aaaaaacaatcgctctgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcggatttttcaccaaacagaagcttcg 40850643  T
Q  117 attaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  40850644 attaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttttcctaccattcttggtggttaaatc 40850743  T
Q  217 ctttaccttgcttgggaa 234  Q
    ||||||||||||||||||    
T  40850744 ctttaccttgcttgggaa 40850761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 47590828 - 47590608
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  47590828 ctcaaaaaacaatcgctccgcttttcatcttatatgattatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagtt 47590729  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  47590728 tcgattaatcaattgctagataaagttaagcttcaatcttattggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaa 47590629  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||| |||||||||||||||||    
T  47590628 atcatttaccttgcttgggaa 47590608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 56024775 - 56024990
Alignment:
Q  17 aaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcg 116  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  56024775 aaaaaacaaccgcttcgcttttcatcttatatggttatcttgtgtgtggttgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcg 56024874  T
Q  117 attaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  56024875 attaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttgatgtttaaatc 56024974  T
Q  217 ctttaccttgcttggg 232  Q
    ||||||||||||||||    
T  56024975 ctttaccttgcttggg 56024990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 48640461 - 48640678
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  48640461 ctcaaaaaacaacagctccgcttttcttcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagct 48640560  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  48640561 tcgattaatcaactgctagataaagttaatcttcaatcttactggtggctgaaagcaaatcgtcatagttttgttttctcctaccattcttggtggttaa 48640660  T
Q  214 atcctttaccttgcttgg 231  Q
    ||| ||||||||||||||    
T  48640661 atcttttaccttgcttgg 48640678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 37870993 - 37870805
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| |||||||| || ||||||||||||||||||| |||| | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  37870993 cttatttggctatcatgtgtgtgagtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 37870894  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    || |||||||||||| ||||| ||| || ||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  37870893 agtttcaatcttactagtggctgaaggcaaatcgtcctggttttgttttctcctaccattcatggtggttgaatcctttaccttgcttg 37870805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 9896843 - 9896649
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||||||||||||  | || ||||||| ||||||||   ||||||||||| ||||||||||    
T  9896843 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgaatattccaccaaaaagaagcttattttaatcaattgttagataaagt 9896744  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||| |||||||| |||||||||| |||||| || || || ||||||||||||||||||||||| || ||||| || |||||||||||||||||||    
T  9896743 taaacttcaatcatactggtggctgaaagcgaaccgcccaagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgggaa 9896649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 43499060 - 43499254
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || |||| |||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  43499060 atcttatttggctatcttgtgtgtgggtgatctggcgtgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 43499159  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  43499160 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 43499254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 36652078 - 36651884
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  36652078 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 36651979  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| || ||||||| |||||| || || | |||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  36651978 taagctccaatcatattggtggctgaaagcgaaccgacttagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 36651884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 42718333 - 42718527
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| ||||||||   ||||||||||| ||||||||||    
T  42718333 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataaagt 42718432  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || |||| ||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  42718433 taagctccaatcatactggtggctgaaagcgaaccgacctaattttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 42718527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 7743335 - 7743521
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| ||||||| |||||||| || ||||||||||| ||||||||  | || ||||||| |||||||||  ||||||||||| || |||||||    
T  7743335 atcttatttggctatcttgcgtgtgggtgatctggcttgaaagaaatgctcgcatattccaccaaaaagaagcttcttttaatcaattgttaaataaagt 7743434  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    |||||||||||| |||||||||  |||||| || || |||||||||||||||||||||||||| || ||||| || |||||||||||    
T  7743435 taagcttcaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 7743521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 39060046 - 39059871
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| || || |||||||||||||||||  | || ||||||| |||||||||  ||||||||||| |||||||| |||||||||||||    
T  39060046 tatcttgtgtgtgggtgatctgacttgaaaggaatgctcgaatattccaccaaaaagaagcttcttttaatcaattgttagataaaattaagcttcaatc 39059947  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgc 227  Q
     |||||||| | |||||| || |  || ||||||||||||||||||||||| || ||||| || | ||||||||||    
T  39059946 atactggtgactgaaagcgaaccacccaagttttgttttctcctaccattcatggtggttgaaccatttaccttgc 39059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 23106938 - 23106851
Alignment:
Q  60 gtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttc 147  Q
    |||||||| |||||||||||||||||||||||| | |||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  23106938 gtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaaattaagcttc 23106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 40346152 - 40345944
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| ||  ||||||| ||||| |||| ||| || |||     
T  40346152 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgt 40346053  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    | | |||||| ||||||||| |||| |||||||| |||||||||| |||||| ||  ||| ||  |||| ||| ||||||||||  || ||||| || |     
T  40346052 tcattcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaactgtcatacctttgctttttcctaccatttgtggtggttgaacca 40345953  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  40345952 tttaccttg 40345944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 50771540 - 50771712
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||||| ||||| ||  |||| || ||||| |||| ||| |  |||     
T  50771540 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgt 50771639  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgtttt 190  Q
    | |||||||| ||||||||| |||  |||||||| |||||||||| |||||| || ||| |||  ||||||||    
T  50771640 tcaatcaattactagataaaattatacttcaatcatactggtggctgaaagcgaaccgttctacctttgtttt 50771712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 30598563 - 30598391
Alignment:
Q  54 tcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctt 153  Q
    |||||||||||||| |||||| | ||||| ||  | | ||| ||||| |||| ||| |  ||| | |||||||| || |||||| |||| |||||||| |    
T  30598563 tcttgtgtgtgggtgatttggatagaaagaaacacacaggtctttcatcaaaaagaggtatcgttcaatcaattactggataaaattaaacttcaatcat 30598464  T
Q  154 actggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    ||||||||| |||||| || |  ||||  |||| ||| ||||||||||  || ||||| || | |||||||||    
T  30598463 actggtggctgaaagcgaaccaacctacctttgctttttcctaccatttgtggtggttgaaccatttaccttg 30598391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 40858393 - 40858173
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  40858393 ctcaaaaaacaatcgctccgcttttcatcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagct 40858294  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  40858293 tcgattaatcaattgctagataaagttaagcttcaatcttactgatggctgaaagctaatcgtcctagttttgttttctccttccattcttagtggttaa 40858194  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||||| |||||||||||||||    
T  40858193 atcctctaccttgcttgggaa 40858173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 40871649 - 40871461
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| | ||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  40871649 cttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 40871550  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||    
T  40871549 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttgcttg 40871461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 17194226 - 17194035
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||    | ||| |||||  | |||||||  ||||||||||||||||||||||||    
T  17194226 cttatttggttatcttgtgtgtgagtgatttgacttgaaaggaatgcttaaatcttt-accaataaaaagcttcttttaatcaattgctagataaagtta 17194128  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||| ||||||||| |||||  ||||||| |||||||||| ||||||||||||| || ||||| |||||||||||||| |||||||    
T  17194127 agcttcaatctcactggtggctgaaagaaaatcgtcatagttttgttctctcctaccattcgtggtggttgaatcctttaccttgtttgggaa 17194035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 9942927 - 9942777
Alignment:
Q  52 tatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatc 151  Q
    |||||||||||||||| || ||||||||||| |||||| |  | |||||||||| |||||||||  ||||||||||| |||||||||||||||| |||||    
T  9942927 tatcttgtgtgtgggtgatctggcttgaaagaaatgcttgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagttaagctccaatc 9942828  T
Q  152 ttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattc 202  Q
     |||||||||| |||||| || || ||||||||||||||||||||||||||    
T  9942827 atactggtggctgaaagcgaaccgacctagttttgttttctcctaccattc 9942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 12623197 - 12623063
Alignment:
Q  96 tttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcct 195  Q
    |||||||||| ||| |||||  |||| ||||||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||||||||| ||    
T  12623197 tttcaccaaaaagaggcttcttttaaacaattgctagataaagtcaagcttcaatcttacttgtggccgaaggcaaatcgtcctagttttgttttcttct 12623098  T
Q  196 accattcttgatggttaaatcctttaccttgcttg 230  Q
    ||||||| |||||||| |||| |||||||||||||    
T  12623097 accattcatgatggttgaatcatttaccttgcttg 12623063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 1031987 - 1032181
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| ||| |||||||||||| || | |||||||||||| |||||  | |||||||||| |||||||||  ||||||||||  ||||||||||    
T  1031987 atcttatttggctatattgtgtgtgggtgatctagcttgaaaggaacgctcgaatatttcaccaaaaagaagcttcttttaatcaattattagataaagt 1032086  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||| |||||||||| |||||| || |    ||||||||||||||||||| |||| || ||||| || | |||||||||||| ||||    
T  1032087 taagcttcaatcatactggtggctgaaagcgaaccacaatagttttgttttctcctactattcatggtggttgaaccatttaccttgcttaggaa 1032181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 8123965 - 8124042
Alignment:
Q  124 aattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccatt 201  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8123965 aattgttagataaagttaagcttcaatcttactggtggttgaaagctaatcgtcctagttttgttttctcctaccatt 8124042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 32575204 - 32575412
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||||||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| ||  ||||||| ||||| |||| ||| || |||     
T  32575204 aaaagcaatcgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgt 32575303  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    | |||||||| ||||||||| |||| |||||||| |||||||||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || ||    
T  32575304 tcaatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccc 32575403  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  32575404 tttaccttg 32575412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 19323986 - 19324167
Alignment:
Q  45 atatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagc 144  Q
    |||||| | |||||||||||||| |||||| | ||||| || |||||||| ||||| |||| ||| || ||| | |||||||| ||||||||| |||| |    
T  19323986 atatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaac 19324085  T
Q  145 ttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    ||||||| ||| |||||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || |||||||||||    
T  19324086 ttcaatcataccggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttg 19324167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 18299814 - 18299607
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| |  |||||||| ||||| |||| ||| || |||     
T  18299814 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgt 18299715  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    |  ||||||| ||||||||| |||| |||||||| |||||||||| |||||  || |||||||| |||| ||| ||||||||||  || ||||| || ||    
T  18299714 tccatcaattactagataaaattaaacttcaatcatactggtggctgaaagggaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccc 18299615  T
Q  218 tttacctt 225  Q
    ||||||||    
T  18299614 tttacctt 18299607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 38141974 - 38142182
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| ||  ||||||| ||||| |||| ||| || |||     
T  38141974 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgt 38142073  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    | | ||||||  |||||||| |||| |||||||| |||||||||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || ||    
T  38142074 tcattcaattattagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccc 38142173  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  38142174 tttaccttg 38142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 15669443 - 15669634
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    |||| |||| |||||| | |||||||||||||| |||| | | ||||| ||  ||||||| ||||  |||| ||| || | | | |||||||| ||||||    
T  15669443 ttttaatctcatatggctttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtctttcttcaaaaagaggccttgttcaatcaattactagat 15669542  T
Q  135 aaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    ||| |||| |||||||| |||||||||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || |||||||||||    
T  15669543 aaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttg 15669634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 29126183 - 29126016
Alignment:
Q  59 tgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatcttactgg 158  Q
    ||||||||| |||||| | ||||| ||  ||||||| ||||| |||| ||| || ||| | |||||||| ||||||||| ||||  ||||||| ||||||    
T  29126183 tgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataaaattaaatttcaatcatactgg 29126084  T
Q  159 tggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttg 226  Q
    |||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || |||||||||||    
T  29126083 tggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttg 29126016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 29626648 - 29626856
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| ||  ||||| | ||||| |||| ||| || |||     
T  29626648 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcggatctttcatcaaaaagaggcctcgt 29626747  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    | | |||||| || |||||| |||| |||||||  ||||| |||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || ||    
T  29626748 tcattcaattacttgataaaattaaacttcaataatactgatggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccc 29626847  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  29626848 tttaccttg 29626856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 41768014 - 41767942
Alignment:
Q  121 atcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctc 193  Q
    ||||||| || || ||| |||| |||||||||| ||| |||| |||||| ||||||||||| |||||||||||    
T  41768014 atcaattactcgacaaaattaaacttcaatctttctgatggctgaaagcgaatcgtcctagctttgttttctc 41767942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 15674137 - 15674219
Alignment:
Q  150 tcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttggg 232  Q
    |||| |||||||  |||||| ||||||||||| ||||||||||| || |||| ||| ||||| || || |||||||| |||||    
T  15674137 tctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttcaacccattaccttgtttggg 15674219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 6029057 - 6029277
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6029057 ctcaagaaacaatcgctccgtttttgatcgtatatggttatcttgtgtttgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 6029156  T
Q  114 tcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||| | || |||||||    
T  6029157 tcgattaatcaattgctagataaagttaagcttcaatcttattagtggctgaaagcgaatcgtcctagttttgttttctcctaccatacatggtggttaa 6029256  T
Q  214 atcctttaccttgcttgggaa 234  Q
    ||| |||||||||||||||||    
T  6029257 atcatttaccttgcttgggaa 6029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 24393667 - 24393861
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| ||||||| ||||||||||||| |  | |||||||||| |||||||||| ||||||||||| | ||||||||    
T  24393667 atcttatttggctatcttgtgtgtgggtgatttggcatgaaaggaatgctggaatctttcaccaaaaagaagcttcgtttaatcaattgtttgataaagt 24393766  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  24393767 taagcctcaatcttactggtggctgaaagtaaatcgtcctagttttgttttctcctaccattcgtggtggttgaatcctttaccttgcttgggaa 24393861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 12912595 - 12912403
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| ||||||||||| || |||||||||||||||| | || | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  12912595 cttatttggctatcatgtgtgtgggtgatatggcttgaaaggaatgattggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 12912496  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  12912495 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttgcttgggaa 12912403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 18972958 - 18972763
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgcta-gataaag 138  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||   | |||||||||| |||||||||| |||||||||||||  |||||||    
T  18972958 atcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctctaatctttcaccaaaaagaagcttcgtttaatcaattgctttgataaag 18972859  T
Q  139 ttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| || ||||| |||| | |||||||||||||||    
T  18972858 ttaagcttcaatcttactcgtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatataccttgcttgggaa 18972763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 7093657 - 7093865
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| ||  ||| ||| ||||| |||| ||| || |||     
T  7093657 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgt 7093756  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    | | |||||| ||||||||| |||| |||||||| |||||||||| |||||| || |||||||  |||| ||| ||||||||||  || ||||| || ||    
T  7093757 tcattcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccc 7093856  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  7093857 tttaccttg 7093865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 8753182 - 8753071
Alignment:
Q  121 atcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatccttt 220  Q
    ||||||| || || ||| |||| |||||||||| |||||||  |||||| ||||||||||| ||||||||||| || |||| ||| ||||| || || ||    
T  8753182 atcaattactcgacaaaattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccatt 8753083  T
Q  221 accttgcttggg 232  Q
    |||||| |||||    
T  8753082 accttgtttggg 8753071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 32737387 - 32737327
Alignment:
Q  45 atatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaa 105  Q
    |||||| ||||||||||||| || |||||| ||||||| || |||||||| ||||||||||    
T  32737387 atatggctatcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaa 32737327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 2380973 - 2380778
Alignment:
Q  35 ttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagat 134  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||||||||| ||||||||||||||||||    
T  2380973 ttttcattttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcagacttttcaccaaacagaagcttcaattaatcaattgctagat 2380874  T
Q  135 aaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    |||||||| ||||||| ||||||||||| |||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  2380873 aaagttaaacttcaattttactggtggctgaaagcaaatcgtcctagtttcgttttctcctaccattcttggtgtttaaatcctttaccttgcttg 2380778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 11031543 - 11031735
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| ||||||||||| ||||| |||||||||||||||||| | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  11031543 cttatttggctatcatgtgtgtgggtgatttgacttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 11031642  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||| || ||||| |||| |||||||||||||||||    
T  11031643 agcttcaatcttactggtggctgaaggcaaatcgtcctaattttgttttctcctaccattcatggtggttgaatcatttaccttgcttgggaa 11031735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 3044166 - 3044283
Alignment:
Q  113 ttcgattaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggtta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3044166 ttcgattaatcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggtta 3044265  T
Q  213 aatcctttaccttgcttg 230  Q
    ||||||||||||||||||    
T  3044266 aatcctttaccttgcttg 3044283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 7901309 - 7901120
Alignment:
Q  36 tttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagata 135  Q
    |||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  7901309 tttcatcttatatggttatcttgtgtgtggat----------gaaaggaatgctcgggtttttcaccaaacagaagcttcaattaatcaattgttagata 7901220  T
Q  136 aagttaagc----ttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgg 231  Q
    |||||||||    |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||  || ||||||||| |||||||||||||||    
T  7901219 aagttaagcaagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctatcatttatggtggttaaattctttaccttgcttgg 7901120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 6764183 - 6764372
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  6764183 atcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 6764282  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgctt 229  Q
    |||||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || ||||||||||||||    
T  6764283 taagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgctt 6764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 12410550 - 12410744
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  12410550 atcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 12410649  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  12410650 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 12410744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 12422610 - 12422804
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  12422610 atcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 12422709  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  12422710 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 12422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 37647728 - 37647922
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||| ||||||||||| || ||||||||||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||||||||||    
T  37647728 atcttatttggctatcctgtgtgtgggtgatctggcttgaaagaaatgctcgtatatttcaccaaaaagaagcttcttttaatcaattgttagataaagt 37647827  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || |||||  | |||||||||||||| ||||    
T  37647828 taagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttggaccctttaccttgcttaggaa 37647922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 29739840 - 29739963
Alignment:
Q  14 ctcaaaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagct 113  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  29739840 ctcaaaaaacaaccgctccgcttttcatcttatatggttattttgtgtgtgagtgatttggcttgaaaggaatgctcgggtttttcaccaaacaaaagct 29739939  T
Q  114 tcgattaatcaattgctagataaa 137  Q
    |||||||||||||||  |||||||    
T  29739940 tcgattaatcaattgacagataaa 29739963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 34394742 - 34394638
Alignment:
Q  126 ttgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttacctt 225  Q
    ||||||||||||| |||||||||||||||||  |||  ||| || |||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||    
T  34394742 ttgctagataaagataagcttcaatcttactattggttgaaggcaaatcgtcctagttttgttttctcctaccattcgtgaaggttgaatcttttacctt 34394643  T
Q  226 gcttg 230  Q
    |||||    
T  34394642 gcttg 34394638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 27271426 - 27271596
Alignment:
Q  55 cttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctta 154  Q
    ||||||||||||| ||||||||| |||| ||||||||  | |||||||||| |||||||||  ||||||||||| ||         ||||| ||||  ||    
T  27271426 cttgtgtgtgggtgatttggcttaaaagaaatgctcgaatatttcaccaaaaagaagcttcttttaatcaattgtta---------aagctccaattata 27271516  T
Q  155 ctggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||| |||| | || ||||||||||||||||||||||||| ||| || ||||| || |||||||||||||||||||    
T  27271517 ctggtggctgaaaacgaaccgtcctagttttgttttctcctacctttcatggtggttgaaccctttaccttgcttgggaa 27271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 29739964 - 29740024
Alignment:
Q  174 cgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||  |||||||||||    
T  29739964 cgtcctagttttgttttctcctatcattcttggtggttaaatcttttaaattgcttgggaa 29740024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 42 - 230
Target Start/End: Original strand, 94633 - 94821
Alignment:
Q  42 cttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagtta 141  Q
    ||||| ||| |||| | ||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||  |||||||||||||||||||||| |    
T  94633 cttatttggctatcatttgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtca 94732  T
Q  142 agcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttg 230  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||    
T  94733 agcttcaatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttgcttg 94821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 23550 - 23742
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgcta-gataaag 138  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||   | |||||||||| |||||||||| |||||||||||||  |||||||    
T  23550 atcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctcaaatctttcaccaaaaagaagcttcgtttaatcaattgctttgataaag 23649  T
Q  139 ttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgg 231  Q
    |||||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||||||| || ||||| |||| ||||||||||||||    
T  23650 ttaagcttcattcttactcgtggctgaaagcaaatcgtcatagttttgttttctcctaccattcgtggtggttgaatcatttaccttgcttgg 23742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 9340 - 9534
Alignment:
Q  40 atcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 139  Q
    ||||||| ||| |||||||||||||||| || ||||||||||||||||||||  | |||||||||| ||||||||   ||||||||||| ||||||||||    
T  9340 atcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataaagt 9439  T
Q  140 taagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  9440 taagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaa 9534  T

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Target: scaffold0432 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 8835 - 9043
Alignment:
Q  18 aaaaacaatcgctccgtttttcatcttatatggttatcttgtgtgtgggtaatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcga 117  Q
    |||| ||| ||||| | |||| |||| |||||| | |||||||||||||| |||||| | ||||| || |||||||| ||||| | || ||| || |||     
T  8835 aaaagcaaccgctcagcttttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgt 8934  T
Q  118 ttaatcaattgctagataaagttaagcttcaatcttactggtggcagaaagctaatcgtcctagttttgttttctcctaccattcttgatggttaaatcc 217  Q
    || ||||||| ||||||||| |||| |||||||| |||||||||| |||||| || |||||||| |||| ||| ||||||||||  || ||||| || ||    
T  8935 ttcatcaattactagataaaattaaacttcaatcatactggtggctgaaagcgaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccc 9034  T
Q  218 tttaccttg 226  Q
    |||||||||    
T  9035 tttaccttg 9043  T

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Target: scaffold0020 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 124397 - 124343
Alignment:
Q  180 agttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  124397 agttttgttttctcctaccattcttggtggttaaatcctttaccttgcttgggaa 124343  T

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Target: scaffold0037 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 861 - 922
Alignment:
Q  173 tcgtcctagttttgttttctcctaccattcttgatggttaaatcctttaccttgcttgggaa 234  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||    
T  861 tcgtcctagttttgttttctcctaccattcatggtggttgaatccttaaccttgcttgggaa 922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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