View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_59 (Length: 237)
Name: NF19973_low_59
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 35096567 - 35096430
Alignment:
| Q |
80 |
atatttgaatatgaactaactataggcatcatattaaaattttattgaatttgcaagtaagtttactcgaaattgttgagcttgaagtaagtaaaaccat |
179 |
Q |
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| T |
35096567 |
atattcgaaaatgaactaactataggcatcatattaaaattttatttaatttgcaagt----ttacttgaaattgttgagcttgaagtacgtaaaaccat |
35096472 |
T |
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| Q |
180 |
caatgattctctgctcagcaggatcaattggatgtggatgac |
221 |
Q |
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| T |
35096471 |
caatgattctctgatcagcaggttcaattggatttggatgac |
35096430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 35109892 - 35109807
Alignment:
| Q |
136 |
gtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcaggatcaattggatgtggatgac |
221 |
Q |
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| T |
35109892 |
gtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcaggatcaattggttgtggatgac |
35109807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 35102636 - 35102524
Alignment:
| Q |
84 |
ttgaatatgaactaactataggcatcatattaaaattttattgaatttgcaagtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaat |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||| | || |
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| T |
35102636 |
ttgaatatgaactaactataggcatcatattaaaattttatttaattttc----aagtttactcgaaattgttgagcttgaagtaggtaa------ctat |
35102547 |
T |
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| Q |
184 |
gattctctgctcagcaggatcaa |
206 |
Q |
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| T |
35102546 |
tattctctgctcagcaggatcaa |
35102524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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