View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19973_low_6 (Length: 652)

Name: NF19973_low_6
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19973_low_6
NF19973_low_6
[»] chr6 (1 HSPs)
chr6 (316-632)||(380510-380826)
[»] chr7 (3 HSPs)
chr7 (316-636)||(6232146-6232467)
chr7 (465-618)||(48888137-48888289)
chr7 (469-590)||(19883466-19883586)
[»] chr1 (3 HSPs)
chr1 (18-316)||(42197830-42198132)
chr1 (18-125)||(42206893-42207000)
chr1 (18-125)||(42215761-42215868)
[»] chr4 (4 HSPs)
chr4 (449-627)||(55329098-55329275)
chr4 (465-600)||(18848029-18848163)
chr4 (464-597)||(55353539-55353671)
chr4 (465-600)||(42111003-42111137)
[»] chr2 (5 HSPs)
chr2 (500-627)||(38970996-38971123)
chr2 (196-306)||(12326624-12326734)
chr2 (215-310)||(12361402-12361497)
chr2 (249-300)||(12355539-12355590)
chr2 (479-570)||(16080456-16080546)
[»] chr8 (3 HSPs)
chr8 (468-627)||(42202637-42202795)
chr8 (465-600)||(44684446-44684580)
chr8 (479-558)||(25967835-25967913)
[»] chr5 (4 HSPs)
chr5 (465-627)||(3678230-3678390)
chr5 (467-621)||(42628995-42629148)
chr5 (470-600)||(2756301-2756430)
chr5 (465-559)||(3761009-3761102)
[»] chr3 (1 HSPs)
chr3 (465-554)||(51361293-51361381)
[»] scaffold0691 (1 HSPs)
scaffold0691 (465-585)||(1168-1287)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 316 - 632
Target Start/End: Original strand, 380510 - 380826
Alignment:
Q  316 actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaaaaacagcaacaacagaaaaccggcatagca 415  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||    
T  380510 actgctgataaccacagccaacctgcacccaaaacaaaactaaacccctgaaccggcaactataacagaaaaatagcaacaacagaaaactggcatagca 380609  T
Q  416 gaaaacaaaagcccaaaaggtgcagcagaactacagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcatt 515  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  380610 gaaaacaatagcccaaaaggtgcagcagaactacaacaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcatt 380709  T
Q  516 ccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaattc 615  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  380710 ccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaatcaccttaatatcctccaccaattc 380809  T
Q  616 accaaaatccttggaaa 632  Q
    |||||||||||||||||    
T  380810 accaaaatccttggaaa 380826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 316 - 636
Target Start/End: Complemental strand, 6232467 - 6232146
Alignment:
Q  316 actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataacagaaaaacagcaacaa-cagaaaaccggcatagc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||    
T  6232467 actgctgataaccacagccaacctgcacccaaaccaaaactaaacccctgaaccggcagctataccagaaaaaccgcaacaaacagaaaactggcatagc 6232368  T
Q  415 agaaaacaaaagcccaaaaggtgcagcagaactacagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcat 514  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6232367 agaaaacaaaagcccaaaaagtgcagcagaactaaagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacattatctcaataagcat 6232268  T
Q  515 tccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaatt 614  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232267 tccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtctagaattagcccaattccacgaaatcaccttaatatcctccaccaatt 6232168  T
Q  615 caccaaaatccttggaaatatt 636  Q
    ||||||||||||||||||||||    
T  6232167 caccaaaatccttggaaatatt 6232146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 465 - 618
Target Start/End: Complemental strand, 48888289 - 48888137
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    ||||||||||||||||||||| |||| ||||||   ||||||| |  ||||||||||||||||  |||||||||||||||||||| ||||||||| | |     
T  48888289 caaaagtcccggacacctctagaactaccccacca-atctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttag 48888191  T
Q  565 tctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcacc 618  Q
    |||||||||  ||||||||||||| | |||||||||||| || |||| ||||||    
T  48888190 tctagaattcacccaattccacgagagcaccttaatatcatcaaccatttcacc 48888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 469 - 590
Target Start/End: Original strand, 19883466 - 19883586
Alignment:
Q  469 agtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatcta 568  Q
    |||||||||||||||||||||| |||||  | |||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||| | | ||||    
T  19883466 agtcccggacacctctaaaactaccccaact-atctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtcta 19883564  T
Q  569 gaattagcccaattccacgaaa 590  Q
    ||    ||||||||||||||||    
T  19883565 gacaccgcccaattccacgaaa 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 42198132 - 42197830
Alignment:
Q  18 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtcataacagcattggttgcaatagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42198132 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtgataacagcattggttgcaatagg 42198033  T
Q  118 tataaaacctgttgcagcgaggttaccagccgatgctaacggaatattgactataaccgattaaccgtcgattggatcggccttcaatacttgtccactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42198032 tataaaacctgttgcagcgaggttaccagccgatgctaacggaatattgactataactgattaaccgtcgattggatcggccttcaatacttgtccactt 42197933  T
Q  218 tggctgttgcataattatccttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaa----ctctattcacgaacttagagagagcaa 313  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  42197932 tggctgttgcatacttatccttttcaaaaagtttactaatgaggaaaactataacatttttatgacaaactctctctattcacgaacttagagagagcaa 42197833  T
Q  314 gaa 316  Q
    |||    
T  42197832 gaa 42197830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 42207000 - 42206893
Alignment:
Q  18 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtcataacagcattggttgcaatagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42207000 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtgataacagcattggttgcaatagg 42206901  T
Q  118 tataaaac 125  Q
    ||||||||    
T  42206900 tataaaac 42206893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 42215868 - 42215761
Alignment:
Q  18 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtcataacagcattggttgcaatagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42215868 ctgaggataacatgaagttatgcacttgtgttggttctatgatacacagcgtgtcttttgaattccataactccgtgataacagcattggttgcaatagg 42215769  T
Q  118 tataaaac 125  Q
    ||||||||    
T  42215768 tataaaac 42215761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 449 - 627
Target Start/End: Complemental strand, 55329275 - 55329098
Alignment:
Q  449 cagcaacctcaacagacaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggc 548  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||  |||||||||||||||||||    
T  55329275 cagcaacctcaacaggaaaaagtcacggacacctctaaaactgccccacct-atctcaataagcattccttgaggttccaacaccactcgtaatagaggc 55329177  T
Q  549 atggaggactcctaaatctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcctt 627  Q
    | |||| |||| ||| ||| ||||| |  ||||| ||||||||||||||||| |||||||| | |||||||||||||||    
T  55329176 aaggagaactcttaagtcttgaattcgttcaatttcacgaaatcaccttaatttcctccacaatttcaccaaaatcctt 55329098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 465 - 600
Target Start/End: Complemental strand, 18848163 - 18848029
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    |||||||||||||||||||||||||| |||||  | ||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||||  |||     
T  18848163 caaaagtcccggacacctctaaaactaccccaact-atctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaag 18848065  T
Q  565 tctagaattagcccaattccacgaaatcaccttaat 600  Q
    ||||| |   |||||||||||| ||| |||||||||    
T  18848064 tctagtaaccgcccaattccaccaaagcaccttaat 18848029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 597
Target Start/End: Complemental strand, 55353671 - 55353539
Alignment:
Q  464 acaaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaa 563  Q
    |||| |||||| | ||||||| ||||| |||||| | ||| ||| | ||||| ||||||||||| |||||| |||||| ||||||| ||||||||  |||    
T  55353671 acaatagtccctgccacctctgaaactaccccacct-atcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaa 55353573  T
Q  564 atctagaattagcccaattccacgaaatcacctt 597  Q
     ||| ||||| |||||||||||||| ||||||||    
T  55353572 gtctggaattcgcccaattccacgagatcacctt 55353539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 600
Target Start/End: Original strand, 42111003 - 42111137
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    |||||||||||||||||||||||||| ||||||  | ||  |  |||||||||||||||||||  ||||||||  || |||||||  |||||||| |||     
T  42111003 caaaagtcccggacacctctaaaactaccccac-ctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaag 42111101  T
Q  565 tctagaattagcccaattccacgaaatcaccttaat 600  Q
    ||| | | | ||||||||||| || | |||||||||    
T  42111102 tcttgtaatcgcccaattccaagagagcaccttaat 42111137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 500 - 627
Target Start/End: Complemental strand, 38971123 - 38970996
Alignment:
Q  500 tatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctagaattagcccaattccacgaaatcaccttaa 599  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||||  |||||||  ||| ||||||||| |||||||||||||||||||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaa 38971024  T
Q  600 tatcctccaccaattcaccaaaatcctt 627  Q
    | |||||||| | |||||||||||||||    
T  38971023 tttcctccacaatttcaccaaaatcctt 38970996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 12326734 - 12326624
Alignment:
Q  196 ggccttcaatacttgtccactttggctgttgcataattatccttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaactctattca 295  Q
    ||||||||||||||||| | || || ||||| || ||| | ||||||||  ||||||| | |||||||| |||||||||||| ||||| || |||||||     
T  12326734 ggccttcaatacttgtctatttcggttgttgtatcattgtacttttcaaggagtttactactgaggaaagctataacattttcatgacgaattctattcg 12326635  T
Q  296 cgaacttagag 306  Q
    |||||||||||    
T  12326634 cgaacttagag 12326624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 12361402 - 12361497
Alignment:
Q  215 ctttggctgttgcataattatccttttcaaaaagtttaccaatgaggaaaactataacatttttatgacaaactctattcacgaacttagagagag 310  Q
    |||||| ||||| ||  ||||||||||||| || ||||| || || ||||| ||||||| ||| |||||||||||||||| ||||||||| |||||    
T  12361402 ctttggttgttgtatccttatccttttcaagaaatttactaacgacgaaaattataacactttcatgacaaactctattcgcgaacttagggagag 12361497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 12355539 - 12355590
Alignment:
Q  249 tttaccaatgaggaaaactataacatttttatgacaaactctattcacgaac 300  Q
    ||||| ||||||||||||||||||| ||| | || |||||||||||||||||    
T  12355539 tttactaatgaggaaaactataacactttcacgaaaaactctattcacgaac 12355590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 570
Target Start/End: Complemental strand, 16080546 - 16080456
Alignment:
Q  479 acctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctaga 570  Q
    |||||||||||| |||||  || |||||  || ||||||||||||||||  |||||||| ||| ||||||| ||||||||| | ||||||||    
T  16080546 acctctaaaactaccccaattt-tctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctttaatctaga 16080456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 468 - 627
Target Start/End: Complemental strand, 42202795 - 42202637
Alignment:
Q  468 aagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatct 567  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||  | |||||||  |||||||||||||||||||| ||||||||| ||| |||    
T  42202795 aagtcccagacacctctaaaactgccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 42202697  T
Q  568 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcctt 627  Q
    ||||||  ||||||||||| ||||||||||||| ||||| || | ||||||| |||||||    
T  42202696 agaattcacccaattccacaaaatcaccttaatttcctcaactatttcaccataatcctt 42202637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 600
Target Start/End: Complemental strand, 44684580 - 44684446
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    |||||||||| ||||||||||||||| |||||| |  ||  |  |||||||||||||||||||  |||||||| ||| ||||||| ||||||||| |||     
T  44684580 caaaagtcccagacacctctaaaactaccccacctg-tcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaag 44684482  T
Q  565 tctagaattagcccaattccacgaaatcaccttaat 600  Q
    | | | | | ||||||||||| || | |||||||||    
T  44684481 ttttgtaatcgcccaattccaagagagcaccttaat 44684446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 558
Target Start/End: Original strand, 25967835 - 25967913
Alignment:
Q  479 acctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggact 558  Q
    ||||||||||||||||| || ||||| || || || || |||||||||| || |||||||||| ||||||| ||||||||    
T  25967835 acctctaaaactgcccc-cgctatcttaacaaacactctttggggttccagctccactcgtaaaagaggcaaggaggact 25967913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 465 - 627
Target Start/End: Original strand, 3678230 - 3678390
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    ||||||||| ||||||||||||||||||||  |  ||||| |||||||||||  |||||||||  ||| ||| |||||||||||| ||||||||| |||     
T  3678230 caaaagtccaggacacctctaaaactgcccacc--tatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaag 3678327  T
Q  565 tctagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaaatcctt 627  Q
    ||||| | |  ||||||||||||||||||||||||| ||||| || | |||||||||||||||    
T  3678328 tctagtaatcacccaattccacgaaatcaccttaatctcctcaacaatttcaccaaaatcctt 3678390  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 621
Target Start/End: Original strand, 42628995 - 42629148
Alignment:
Q  467 aaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatc 566  Q
    |||||||||||| ||||||||||| |||||  | ||||||  |  ||||||||||||||||| |||||||| ||||||||||| ||||||||  | | ||    
T  42628995 aaagtcccggacgcctctaaaactaccccaact-atctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtc 42629093  T
Q  567 tagaattagcccaattccacgaaatcaccttaatatcctccaccaattcaccaaa 621  Q
    ||| |   |||||||||||||||| |||| |||| || || || | |||||||||    
T  42629094 tagtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcaccaaa 42629148  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 600
Target Start/End: Original strand, 2756301 - 2756430
Alignment:
Q  470 gtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaatctag 569  Q
    ||||||||| ||||||||||| |||||  | |||||| ||| |||| |||||||||||  |||||||||||||| ||||| ||||| ||| | | |||||    
T  2756301 gtcccggacgcctctaaaactaccccaact-atctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctag 2756399  T
Q  570 aattagcccaattccacgaaatcaccttaat 600  Q
    ||     |||||||||||||| |||||||||    
T  2756400 aaaccatccaattccacgaaagcaccttaat 2756430  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 559
Target Start/End: Original strand, 3761009 - 3761102
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactc 559  Q
    ||||||||||  |||||||||||||| ||||| | ||| ||| ||| |||||||||||||||   || ||||||||||||||||| |||| ||||    
T  3761009 caaaagtcccaaacacctctaaaactacccca-gctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactc 3761102  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 465 - 554
Target Start/End: Complemental strand, 51361381 - 51361293
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggag 554  Q
    |||||||||| ||||||||||||||| |||||  | ||||||||| |||||||||||||||||  |||||||| ||||||||||| ||||    
T  51361381 caaaagtccctgacacctctaaaactaccccaact-atctcaataggcattccttggggttccaacaccactcataatagaggcagggag 51361293  T

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Target: scaffold0691 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 585
Target Start/End: Complemental strand, 1287 - 1168
Alignment:
Q  465 caaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccggcaccactcgtaatagaggcatggaggactcctaaa 564  Q
    |||||||||||||||||||||||||| |||||| |  ||  |  |||||||||||||| ||||  |||||||| ||| ||||||| ||||||||| |||     
T  1287 caaaagtcccggacacctctaaaactaccccacctg-tcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaag 1189  T
Q  565 tctagaattagcccaattcca 585  Q
    ||| | | | |||||||||||    
T  1188 tcttgtaatcgcccaattcca 1168  T

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