View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_62 (Length: 236)
Name: NF19973_low_62
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 12030375 - 12030579
Alignment:
| Q |
17 |
aataacgttaaaacaaagagcaattgcaatgaatacataaccaaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatt |
116 |
Q |
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| T |
12030375 |
aataacgttaaaacaaagagcaattgcaatgaatacataaccaaacgaggtaattgcagcaacggttgaaatccatgtcaattcatgaaagtttggaatt |
12030474 |
T |
|
| Q |
117 |
tgagacaagaaaatctgcaatgtcccaaaaccaatcatgtagggattataagaactactgcaatcagcttcatgtccttttctatggacacagacaatac |
216 |
Q |
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| T |
12030475 |
tgagacaagaaaatctgcaatgtcccaaaactaatcatgtagggattataagaactactgcaatcagcttcatgtccttttctatggacacagacaatac |
12030574 |
T |
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| Q |
217 |
tctct |
221 |
Q |
| |
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||||| |
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| T |
12030575 |
tctct |
12030579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 242806 - 242630
Alignment:
| Q |
29 |
acaaagagcaattgcaatgaatacataaccaaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaa |
128 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || || |||| ||||| |||||||||| || |||||||| |||||||||||||||||| |
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| T |
242806 |
acaaagaccaattgcaatgaatacataaccaaacgaggtgatagcggcaatggttgagatccatgtcagtttgtgaaagttgggaatttgagacaagaaa |
242707 |
T |
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| Q |
129 |
atctgcaatgtcccaaaaccaatcatgtagggattataagaactactgcaatcagcttcatgtccttttctatggac |
205 |
Q |
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| T |
242706 |
atctgcaatatcccaaaaccgatcatgtagggattagaagtactgctacaatcagcttcaagtccttttctatggac |
242630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 222598 - 222762
Alignment:
| Q |
41 |
tgcaatgaatacataaccaaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtc |
140 |
Q |
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||||||||||||||||||||||||||| || || |||| ||||| |||||||||| || |||||||| ||||||||||||||||||||||||||| || |
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| T |
222598 |
tgcaatgaatacataaccaaacgaggtgatagcggcaatggttgatatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatc |
222697 |
T |
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| Q |
141 |
ccaaaaccaatcatgtagggattataagaactactgcaatcagcttcatgtccttttctatggac |
205 |
Q |
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|||||||| ||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
222698 |
ccaaaaccgatcatatagggattataagaagtgctgcaatcagcttcaagtccttttctatggac |
222762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 51529454 - 51529332
Alignment:
| Q |
43 |
caatgaatacataaccaaacgaggtaattgcagcaacagttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtccc |
142 |
Q |
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|||| ||| |||||||||| |||||||| |||||||||||||| ||| |||| || | ||| || ||||| ||||||||||| |||||||| || |||| |
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| T |
51529454 |
caattaatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatccc |
51529355 |
T |
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| Q |
143 |
aaaaccaatcatgtagggattat |
165 |
Q |
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|||||| | |||||||||||||| |
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| T |
51529354 |
aaaaccgagcatgtagggattat |
51529332 |
T |
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