View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19973_low_65 (Length: 231)
Name: NF19973_low_65
Description: NF19973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19973_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 40200275 - 40200466
Alignment:
| Q |
21 |
tgtgcttgtatattacttacttacggagcaaggnnnnnnnnctatttaatgactaatcaaggtctccattctttttagaaatggaaaggatccaaatcct |
120 |
Q |
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| T |
40200275 |
tgtgcttgtatattacttacttacggagcaaggaaaaaaaactatttaatgactaatcaaggtctccattctttttagaaatggaaaggatccaaatcct |
40200374 |
T |
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| Q |
121 |
tactattacttttaagaattttcaattatcgccataaattcaagtctgcatgtcaaatttatttcaattaatcagtactaaagtcagaaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
40200375 |
tactattacttttaagaattttcaattatcgccataaattcaagtctgcaagtcaaatttattacaattaatcagtactaaagtcagaaatc |
40200466 |
T |
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